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Table 2 Characterization of 41 microsatellites isolated from cDNA of Asian seabass

From: A simple and efficient method for isolating polymorphic microsatellites from cDNA

Locus

GenBank No

Repeat motif

Primer sequence (5'-3')

Allele number

Size range (bp)

Ho

He

LcaE072

(TG)18

CGCGGGGTTCCTCTTTCA

4

196–202

0.17

0.33*

EF210110

 

GCACCTGCACAGCTACACTCT

    

LcaE073

(CA)8

CGGGTAGAAGACTGGAGGAGAG

9

298–338

0.71

0.79

EF210111

 

ACATTTTGCCACCATTTTGACTT

    

LcaE74

(TG)9

TCTGGGGGCTGGTATATTTTCCTG

2

396–398

0.42

0.45

EF210112

 

ACACATTCCACCGCTGCCATTT

    

LcaE075

(TG)11

CGCGGGATTGCCACTTTATTTT

5

226–234

0.38

0.56*

EF210113

 

GAGGATGGACTTCACAGGCACAGA

    

LcaE076

(TG)28

GGGATCAGAACAAGAAAACAACC

20

117–185

0.91

0.92

EF210114

 

TAATCTAGGCACCAGGCTTCTTC

    

LcaE077

(TG)7

CCTCACTGTGTCCAAGCATC

2

166–168

0.54

0.51

EF210115

 

TCCCCCTCAATAAGTAAAAATAG

    

LcaE079

(CA)13

CCCGCCAAGGTCTCGTGTC

3

186–196

0.25

0.27

EF210116

 

CGGCAGCTGCGTGAATGTG

    

LcaE080

(GA)12

GTCGCACCAGGTTAGGAGA

3

142–146

0.35

0.66*

EF210117

 

AAAAAGAGGAGCCACAGAGA

    

LcaE201

(AG)13

GGCAAGCAGCCTCGGAGAAA

7

140–158

0.83

0.66

EF210118

 

TAACGGTTTTGGAAATTGAGATGC

    

LcaE203

(CT)14

AGGCCCGAGGGTGAGCAG

6

262–278

0.54

0.83*

EF210119

 

ATGCAAAGGTGCGTGTATGATTTT

    

LcaE205

(CA)12

CTGTGTCGCCTGTCGTAGTGACTG

6

195–213

0.46

0.61*

EF210120

 

CATTTGCTCCCATACTGGAACTGC

    

LcaE206

(CA)8

GAAGCGGTCGAGGAAGGAATCC

3

132–136

0.41

0.46

EF210121

 

AGGCTTGGTACTTGCAGTGCTGTG

    

LcaE208

(AC)10

GTCAGGCTGGCGACCATCTCA

3

176–180

0.44

0.46

EF210122

 

CAAATTCAAACCTTTATTAACACAACTA

    

LcaE209

(AC)16

GTGTGAAACCAGGGAGCGTATG

7

208–240

0.58

0.77

EF210123

 

CCTTTGGGCAGTACTGTATTTTTC

    

LcaE210

(TG)10

TCTGTACAAGTGGCACTCCATCAT

5

70–78

0.38

0.57*

EF210124

 

CAATCAAGCTTCACTGTTTTTACC

    

LcaE211

(TG)20

TTTTTGAGGGGTACAATAAGTGTG

13

202–278

0.58

0.91*

EF210125

 

GAGAGCGGGATGAAGTATGAAG

    

LcaE014

(TC)11

TGGAGAATGACACAAACGAGTAAA

6

256–266

0.58

0.76

FJ535708

 

ATTTGGGTGCATAGTGAGACAGTC

    

LcaE015

(CA)16

AAGGCAAAGAGACACACACAC

5

153–167

0.68

0.66

FJ535709

 

CTCGATTCACTCTGCTCCATG

    

LcaE016

(TC)8

AGCAGCGGAGGTGGAGTCA

4

258–266

0.87

0.66*

FJ535710

 

GGAGGGAGGGAGGGAGGAG

    

LcaE020

(TG)10

ACCCCACGCAAGGAGAGGATAAT

3

191–195

0.35

0.36

FJ535711

 

GCTGGCAGGCGTTGTAATGAGTT

    

LcaE021

(CA)7

CCTCAGTAATTTGGTCAAGAAACT

3

144–158

0.44

0.33

FJ535712

 

TGCAAGGACCTCTATGATACAAA

    

LcaE022

(GA)10

ACTAACCCCGTTTGGCGTCCATCT

2

304–306

0.44

0.42

FJ535713

 

TTTGGCTTCGTTGTGATCATCAGC

    

LcaE082

(TC)5–(TG)8

ATGGGGGTGGGGGTGTAACTTT

2

326–328

0.51

0.50

FJ535714

 

GCAGGGGCCCGGCTCATA

    

LcaE083

(TG)23

GTCAAGGTAAACTGCCAATAG

3

154–158

0.47

0.38

FJ535715

 

AGAGAAAATGAGAGGAAGTTAGG

    

LcaE098

(CA)12

GGGGGACAGTCAGGCAGATAGA

3

202–206

0.52

0.54

FJ535716

 

GCAGCAGATGCCTTTAACATTAGG

    

LcaE100

(TG)7

CGCGGGTGTACACTTTGTATA

2

64–74

0.45

0.33

FJ535717

 

CTCAGTGTTTCTTTCTCAATGTCA

    

LcaE102

(TG)10

CGCGGGGTTTAAGGAATGTAAG

3

176–180

0.45

0.38

FJ535718

 

AGGAAGGCCACGGTGATGG

    

LcaE108

(TG)7

GAGCAGCTGGCCGGAAAGTAAAT

2

172–178

0.38

0.25

FJ535719

 

AGGCAGCAGAGGGAAAAGAAAATA

    

LcaE111

(CA)7

AGTATACATGCCAGCAGTGTTACA

2

180–192

0.33

0.33

FJ535720

 

ATTTTTCCATCCTCGCTTCTC

    

LcaE118

(CA)9

GGCCACGACGCGTAATCACTC

3

102–110

0.25

0.46*

FJ535721

 

TGCCCTGCTTCTTTTCCCTTCT

    

LcaE120

(TC)9

ACCTCCCTCCAGACCATAAACAAC

3

144–160

0.33

0.35

FJ535722

 

AAGTCAGCCACGCTATACGCTTAG

    

LcaE124

(TG)15

GGAAACAGGCTCCATCATCTTA

2

166–170

0.46

0.40

FJ535723

 

CACAACCGCTAAAGGCTATCA

    

LcaE12 5

(TG)8

AAGCAAAGCAAAGCTCGGCTCTAT

5

212–220

0.63

0.76

FJ535724

 

TGAAGGTGCTTGGCGTCAGAT

    

LcaE187

(TC)14

AAGCGCCTTTCTGTTCGTTATTC

10

146–178

0.79

0.86

FJ535725

 

TGAGGGGATCAGAAATGAAAACTC

    

LcaE212

(GA)17

TGAGGCATTTCTGAGAACCAACAC

7

264–276

0.59

0.77*

FJ535726

 

AGGCTGGGCCAGATAAACACAA

    

LcaE218

(TG)12

AACAAATGTGGCAAAAAGGTCTGC

4

280–288

0.13

0.20*

FJ535727

 

TTTGGGAAACTGCTCAACATCACC

    

LcaE223

(CA)10

GACCGCCCCTTCCTCTACCTGAT

7

156–164

0.70

0.76

FJ535728

 

CAAACGCAAAGCAAACACCTGAAA

    

LcaE241

(CA)16

GGAGGCCATGGAGAAGCAGATAG

6

199–217

0.50

0.72

FJ535729

 

CCTTTGGGCAGTACTGTATTTTTC

    

LcaE246

(TG)7

CGCGGGTGAGACTATTACAGA

3

276–280

0.44

0.42

FJ535730

 

CAGTGCTGCGATATGTCTATTCAT

    

LcaE248

(TG)12

CTCGGCCAGGTCTGATGAGT

8

169–187

0.83

0.46*

FJ535731

 

TAATACTGACGTCGCCTCGTTC

    

LcaE250

(TG)7

GGCTCTCCCGTCTCCAGGTTT

3

94–104

0.42

0.51*

FJ535732

 

CTGCGCCCTCCCATCAGTG

    
  1. H O , observed heterozygosity; He, expected heterozygosity; *HWE, P < 0.05