Mapping QTL affecting resistance to Marek's disease in an F6 advanced intercross population of commercial layer chickens

Heifetz, Eliyahu M; Fulton, Janet E; O'Sullivan, Neil P; Arthur, James A; Cheng, Hans; Wang, Jing; Soller, Morris; Dekkers, Jack CM

doi:10.1186/1471-2164-10-20

Table 3 Markers significant for Z-test and/or Chi-square (CS): P-values for Z-test, CS and interval analysis (IA)

From: Mapping QTL affecting resistance to Marek's disease in an F6 advanced intercross population of commercial layer chickens

Marker	Chromosome	Pos	Z	CS	IA	Type
MCW0106	1	94	0.60	0.00	0.02	C
ADL1245	1	245	0.00	0.00^§	0.99	Z
ADL1248	1	248	-0.02	0.63	0.93
LEI0217	1	299	-0.03	0.00	0.14	ZC
HYL0238	2	45	-0.48	0.04	0.10	C
*ADL0270	2	46	-0.35	0.14	0.11
ADL0270r	2	46	-0.25	0.01	0.11	C
HYL0247	2	54	-0.98	0.01	0.11
MCW0063	2	119	0.01	0.67	0.62	Z
MCW0239	2	126	0.00	0.28	0.38	Z
ADL0157r	2	245	0.09	0.01	0.46	C
MCW0257	2	272	0.18	0.00	0.02	C
MCW0257r	2	272	0.15	0.00	0.02	C
*MCW0288	2	277	0.61	0.19	0.19
MCW0288r	2	277	0.40	0.01	0.19	C
MCW0051	2	358	0.02	0.03	0.02	ZC
MCW0051r	2	358	0.04	0.00	0.02	C
ADL2361	2	361	0.01	0.00	0.00	ZC
*MCW0245	2	364	0.11	0.10	0.03	C
MCW0245r	2	364	0.01	0.00	0.03	ZC
*ADL2374	2	374	0.04	0.82	0.61
MCW0282	2	378	0.01	0.29	0.17	Z
MCW0282r	2	378	0.00	0.09	0.17	Z
CPPP	3	292	0.00	0.05	0.22	ZC
MCW0005	4	75	0.26	0.01	0.30
*UMA4027	4	137	-0.12	0.26	0.18
UMA4027r	4	137	-0.07	0.03	0.18	C
*HYL0437	4	138	-0.14	0.09	0.17
HYL0449	4	144	-0.43	0.01	0.10	C
HYL0515	5	31	0.27	0.03^§	1.00
*ADL0292	5	83	-0.04	0.18	0.20
*ROS0052	5	90	-0.05	0.63	0.55
MCW0078	5	93	0.00	0.03	0.11	Z
*ADL0312	5	95	-0.06	0.52	0.39
ADL0023	5	96	-0.02	0.29	0.34	Z
MCW0081	5	152	-0.02	0.00	0.00	ZC
MCW0081r	5	152	-0.01	0.00	0.00	ZC
ADL0166	5	162	0.03	0.00	0.00	ZC
ADL0166r	5	162	0.02	0.00	0.00	ZC
ADL0298	5	198	0.02	0.00	0.11	ZC
ADL0298r	5	198	0.37	0.00	0.11	C
MCW0305	8	15	-0.70	0.00^§	0.97
HYL8003	8	40	0.00	0.00	0.47	ZC
HYL8033	8	59	-0.02	0.42	0.53	Z
ROS0307	8	96	0.42	0.00^§	0.99
LEI0028r¹	9	51	0.50	0.03^§	0.65
LMU0006¹	9	51	-0.97	0.00^§	0.65
*HYL0928¹	9	55	-0.22	0.33	0.92
LEI0197¹	9	56	0.14	0.03^§	0.91
LEI0197r¹	9	56	0.00	0.00^§	0.91	Z
ADL0259	9	122	-0.01	0.00	0.00	ZC
MCW0244	13	16	0.04	0.03	0.37	C
MCW0052¹	15	26	0.10	0.01^§	0.63
HYL1808	18	23	0.00	0.00	0.01	ZC
MCW0217	18	24	-0.07	0.03	0.01	C
MCW0217r	18	24	-0.06	0.02	0.01	C
*HYL1809	18	26	-0.04	0.07	0.03
HYL1816	18	32	-0.09	0.00	0.22	C
MCW0209	26	36	-0.15	0.03	0.28
*HYL2612	26	66	0.15	0.10	0.09
LEI0074	26	67	0.55	0.00	0.08	C
LEI0074r	26	67	0.26	0.04	0.08	C
ADL2668	26	68	0.64	0.00	0.01	C
*ADL2669	26	68	0.92	0.82	0.01
*ADL2669r	26	68	0.24	0.00	0.01	C
*ROS0309	Z	36	0.12	0.75	0.86
MCW0055	Z	37	0.00	0.01§	0.63	Z
MCW0258	Z	42	0.02	0.24	0.81	Z
MCW0331	Z	43	0.02	0.11	0.86	Z
*ROS0301	Z	49	0.09	0.92	1.00
ADL0273	Z	52	0.33	0.01^§	0.53
MCW0241	Z	74	0.01	0.00^§	0.50	Z
MCW0227	Z	87	-0.23	0.03	0.24	C
LEI0121	Z	97	0.50	0.01	0.26	C
LPL	Z	103	0.59	0.00	0.03	C

¹These markers were significant for CS, but were not supported by IA. They are included in the list of QTLR, because they corresponded to QTLR previously mapped by [18].
PFP thresholds: Z, 0.028; CS, 0.048; *, Non-significant but part of a linked series of significant markers defining a QTLR; Italics, markers not included in final count of QTLR because significant only for a single test and marker; §, CS not supported by IA; Type, tests for which marker is significant; r at the end of a marker name represents a repeat test of the same marker; Spaces between rows delineate the individual QTLR.

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ISSN: 1471-2164

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