A supervised learning approach for taxonomic classification of core-photosystem-II genes and transcripts in the marine environment

Table 3 Summary of prediction results for psbA DNA and RNA sequences extracted from the Mediterranean Sea.

	Loc^#	Date	Depth	Seq^$	PH	PL	S	PM	PP	SM	SP	N^&	T*
A	Tb01	Jan 07	surface	DNA	1	14	6	11	6	2	8	2	50
B	Tb01	Jan 07	surface	RNA	7	18	0	0	0	0	0	0	25
C	Tb04	Jan 07	surface	DNA	2	7	0	12	7	3	46	0	77
D	Tb04	Jan 07	surface	RNA	2	4	0	0	0	0	0	0	6
E	Tb01	Oct 06	surface	DNA	1	1	50	7	0	1	6	0	66
F	Tb01	Oct 06	surface	RNA	4	4	8	0	0	0	0	0	16
G	Tb01	Oct 06	DCM	DNA	0	11	0	48	14	0	9	6	88
H	Tb01	Oct 06	DCM	RNA	1	45	0	0	0	0	2	0	48
I	Tb04	Oct 06	surface	DNA	0	0	3	0	0	10	51	2	66
J	Tb04	Oct 06	surface	RNA	0	0	10	0	0	0	0	0	10
K	Tb01	Mar 06	surface	DNA	4	1	7	18	3	8	14	1	56
L	Tb01	Mar 06	surface	RNA	6	2	7	0	0	0	0	0	15
M	Tb01	Mar 06	DCM	DNA	2	13	0	19	6	8	15	7	70
N	Tb01	Mar 06	DCM	RNA	6	51	7	0	0	0	0	0	64
O	Tb04	Mar 06	surface	DNA	4	11	2	7	0	8	42	0	74
P	Tb04	Mar 06	surface	RNA	9	17	2	0	0	0	1	0	29
Q	Tb01	May 06	surface	DNA	0	0	11	3	0	14	11	1	40
R	Tb01	May 06	surface	RNA	10	0	3	0	0	0	0	0	13
S	Tb01	May 06	DCM	DNA	0	17	0	4	0	0	3	9	33
T	Tb01	May 06	DCM	RNA	1	48	0	0	0	0	0	0	49
					60	264	116	129	36	54	208	28	895

^# – Location, Station; ^$ – Sequence; ^&– No decision; * – Total PH – Prochlorococcus HL- Bacteria; PL – Prochlorococcus LL- Bacteria; S – Synechococcus Bacteria; PM – Prochlorococcus Myovirus; PP – Prochlorococcus Podovirus; SM – Synechococcus Myovirus; SP – Synechococcus Podovirus

ISSN: 1471-2164