Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens

Wilkinson, Paul; Waterfield, Nicholas R; Crossman, Lisa; Corton, Craig; Sanchez-Contreras, Maria; Vlisidou, Isabella; Barron, Andrew; Bignell, Alexandra; Clark, Louise; Ormond, Douglas; Mayho, Matthew; Bason, Nathalie; Smith, Frances; Simmonds, Mark; Churcher, Carol; Harris, David; Thompson, Nicholas R; Quail, Michael; Parkhill, Julian; ffrench-Constant, Richard H

doi:10.1186/1471-2164-10-302

Table 1 Annotated proteins in the P. asymbiotica AC FM162592 plasmid

From: Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens

pPAU1 plasmid CDS	Protein	Organism	Score	E-value
pPA0001	IS21 family transposase	Yersinia pestis Angola	357	8.00E-097
pPA0002	hypothetical protein YPMT1.86c – putative transposase	Yersinia pestis CO92	101	1.00E-019
pPA0003	putative integrase	Yersinia pestis FV-1	331	6.00E-089
pPA0004	hypothetical protein	Pasteurella pneumotropica	43.5	0.035
pPA0005	hypothetical protein PROPEN_02818	Proteus penneri ATCC 35198	206	4.00E-051
pPA0006	hypothetical protein HCM2.0001c	Salmonella enterica subsp enterica serovar Typhi str. CT18	66.2	5.00E-009
pPA0007	replication protein repA	Escherichia coli	220	2.00E-055
pPA0008	hypothetical protein plu0861	Photorhabdus luminescens subsp. laumondii TTO1	162	4.00E-038
pPA0010	hypothetical protein plu0862	Photorhabdus luminescens subsp. laumondii TTO1	295	5.00E-078
pPA0011	NO HITS	NO HITS
pPA0012	NO HITS	NO HITS
pPA0013	replication protein repA	Escherichia coli	342	5.00E-092
pPA0014	NO HITS	NO HITS
pPA0016	replication protein repA	Escherichia coli	342	5.00E-092
pPA0017	hypothetical protein HCM2.0001c	Salmonella enterica subsp. enterica serovar Typhi str. CT18	114	2.00E-023
pPA0018	resolvase	Yersinia pestis biovar Orientalis strain IP275	236	4.00E-060
pPA0019	hypothetical protein Gura_3302	Geobacter uraniireducens Rf4	370	2.00E-100
pPA0020	transposase	Yersinia pestis Antiqua	1561	0
pPA0021	putative transposase	Yersinia pestis CO92	149	5.00E-034
pPA0022	hypothetical protein pG8786_001	Yersinia pestis	340	1.00E-091
pPA0023	transposase	Yersinia pestis Pestoides F	365	5.00E-099
pPA0024	putative transposase	Yersinia pestis CO92	117	2.00E-024
pPA0025	putative transposase	Yersinia pestis CO92	860	0
pPA0026	transposase	Yersinia pestis Antiqua	112	8.00E-023
pPA0027	putative transposase	Yersinia pestis CO92	124	2.00E-026
pPA0028	putative transposase	Yersinia pestis CO92	233	3.00E-059
pPA0029	putative transposase	Yersinia pestis CO92	52.8	6.00E-005

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ISSN: 1471-2164

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