Table 4 Twenty most significantly over-represented GO terms in pseudogenes
From: Identification and characterization of pseudogenes in the rice gene complement
GO term | Number of pseudogenes | Percent of pseudogenes | Percent of Osa1 Gene Complement | p-value | GO term description |
|---|---|---|---|---|---|
GO:0019748 | 250 | 36.4 | 11.7 | 2.5E-63 | Secondary metabolic process |
GO:0009058 | 277 | 40.3 | 16.9 | 1.1E-47 | Biosynthetic process |
GO:0008150 | 186 | 27.1 | 9.6 | 3.8E-39 | Biological process |
GO:0006519 | 162 | 23.6 | 9.0 | 3.0E-30 | Amino acid and derivative metabolic process |
GO:0007165 | 341 | 49.6 | 29.0 | 3.5E-30 | Signal transduction |
GO:0016301 | 418 | 60.8 | 41.7 | 2.3E-24 | Kinase activity |
GO:0005739 | 248 | 36.1 | 19.6 | 4.0E-24 | Mitochondrion |
GO:0030246 | 101 | 14.7 | 5.2 | 7.0E-21 | Carbohydrate binding |
GO:0009987 | 254 | 37.0 | 21.5 | 7.1E-21 | Cellular process |
GO:0016740 | 216 | 31.4 | 17.7 | 7.9E-19 | Transferase activity |
GO:0007582 | 228 | 33.2 | 19.5 | 1.2E-17 | Physiological process |
GO:0009719 | 300 | 43.7 | 29.3 | 5.8E-16 | Response to endogenous stimulus |
GO:0016020 | 280 | 40.8 | 26.8 | 8.2E-16 | Membrane |
GO:0006629 | 103 | 15.0 | 6.5 | 3.2E-15 | Lipid metabolic process |
GO:0005515 | 189 | 27.5 | 16.3 | 6.1E-14 | Protein binding |
GO:0005618 | 165 | 24.0 | 13.9 | 5.6E-13 | Cell wall |
GO:0004872 | 51 | 7.4 | 2.5 | 8.7E-12 | Receptor activity |
GO:0030154 | 57 | 8.3 | 3.2 | 5.2E-11 | Cell differentiation |
GO:0005886 | 73 | 10.6 | 4.7 | 1.3E-10 | Plasma membrane |
GO:0006464 | 138 | 20.1 | 11.8 | 1.8E-10 | Protein modification process |