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Table 1 The silkworm OBP genes family

From: The Odorant Binding Protein Gene Family from the Genome of Silkworm, Bombyx mori

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Scaffold ID

Chromosome

Annotation

Probe

Expression

BmorOBP1

BmorGOBP1

nscaf3052

19

BGIBMGA012611

sw04017

An1

BmorOBP2

BmorGOBP2

nscaf3052

19

BGIBMGA012614

sw15189

An1

BmorOBP3

BmorPBP1

nscaf3052

19

BGIBMGA012615

sw09490

An6

BmorOBP4

 

nscaf3052

19

BGIBMGA012616*

sw09491

 

BmorOBP5

 

nscaf3052

19

   

BmorOBP6

 

nscaf3052

19

BGIBMGA012617

sw01959

 

BmorOBP7

 

nscaf2902

18

BGIBMGA008356*

sw11831†

 

BmorOBP8

 

nscaf2902

18

BGIBMGA008355*

sw11831†

Mg2

BmorOBP9

     

Mg2, Ep7

BmorOBP10

 

nscaf2902

18

   

BmorOBP11

 

nscaf2902

18

BGIBMGA008354

sw22119

Mg100

BmorOBP12

 

nscaf2902

18

  

Mg12

BmorOBP13

 

nscaf2902

18

BGIBMGA008353*

sw15408

Mg3

BmorOBP14

 

nscaf2902

18

 

sw15407

An1

BmorOBP15

 

nscaf2902

18

BGIBMGA008352*

sw21849

 

BmorOBP16

 

nscaf2902

18

   

BmorOBP17

 

nscaf2902

18

BGIBMGA008351

  

BmorOBP18

 

nscaf2902

18

BGIBMGA008474

  

BmorOBP19

 

nscaf2902

18

 

sw13149†

 

BmorOBP20

BmorABPX

nscaf2330

26

BGIBMGA002308

sw00604

 

BmorOBP21

 

nscaf2674

5

BGIBMGA003463*

 

BmorOBP22

 

nscaf2529

5

BGIBMGA002630

 

Em1

BmorOBP23

 

nscaf2529

5

BGIBMGA002629

sw03370

Mg37, Sm2, Wd1

BmorOBP24

 

nscaf2529

5

BGIBMGA002628

sw12016

 

BmorOBP25

 

nscaf2529

5

BGIBMGA002627

sw20121†

 

BmorOBP26

 

nscaf2529

5

BGIBMGA002666*

sw20121†

Mg1

BmorOBP27

 

nscaf2529

5

BGIBMGA002626

sw20121†

Sp3, Sm3, An3, Mt1, Fs1, Bp1, Mi2, Wd10, Te1

BmorOBP28

 

scaffold896

    

BmorOBP29

 

nscaf2983

7

BGIBMGA010039*

sw15978

Te2, Fp1

BmorOBP30

 

nscaf2983

7

BGIBMGA010011*

sw04366†

Bp1

BmorOBP31

 

nscaf2983

7

BGIBMGA010010

sw15426

Ce2, Bs8, Bp24

BmorOBP32

 

nscaf2943

14

BGIBMGA009290*

sw00262

Pb1, He1

BmorOBP33

 

nscaf2943

14

BGIBMGA009291

  

BmorOBP34

 

nscaf2943

14

BGIBMGA009292*

 

BmorOBP35

 

nscaf2943

14

   

BmorOBP36

 

nscaf2948

14

BGIBMGA009352*

sw14581

 

BmorOBP37

 

nscaf2948

14

BGIBMGA009366*

sw05807

 

BmorOBP38

 

nscaf3063

16

BGIBMGA013247

sw14065

Mg4

BmorOBP39

 

nscaf1681

22

BGIBMGA000225*

sw00870

EP1

BmorOBP40

 

nscaf3026

23

BGIBMGA011298*

sw11835

Fl2

BmorOBP41

 

nscaf3026

23

BGIBMGA011276*

sw11149

Ov5, Ep1

BmorOBP42

 

nscaf3027

23

BGIBMGA011433

sw20434

Mg2

BmorOBP43

 

nscaf3027

23

BGIBMGA011432*

sw03198

Ov6, Fs3, fl3, fp2

BmorOBP44

 

nscaf2993

12

BGIBMGA010425

sw09301

Fp3

  1. This table lists the nomenclature, accession numbers, ID, Chromosome, array probe and expression of all 42 odorant binding-like protein genes identified in this study. We have modified annotations to some of the BmOBP genes as indicated by the asterisk. four probes with approximately 20 bases mismatched to the gene sequences are marked with a cross mark. The tissue type of EST data was indicated using abbreviations: Mg (maxillary galea), Sm (middle silkgland), Sp (posterior silkgland), Wd (wing disk), Mt (Malpighian tubule), Fl (Fat body), Mi (Midgut), Te (Testis), He (Hemocyte), Ep (Epidermis) (5th instar larva day 3), Fp (Fat body, pupa 0), Fs (Fat body, spinning 2), Ov (Ovary, spinning stage day-0, day-3), Ce (compound eye, mixed stages from 5th instar larva to pupa), Bs (Brain, mixed stages from day three 5th instar to S3), Bp (Brain, a mixture of pupal stages after P1, just after pupation), An (antenna, adult moth), Em (Embryo, 72 hours), Pb (whole mid-stage pupae without the cuticle). The number of EST is appended to the tissue type.
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BMC Genomics

ISSN: 1471-2164

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