From: High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPs
Illumina | SOLiD | |||
---|---|---|---|---|
B6 | D2 | B6 | D2 | |
Total basepairs covered | 2898101 | 3000000 | 2898101 | 3000000 |
Ns in realignment | 547 | 23207 | 82499 | 116135 |
Realignment discrepancies to B6 reference or SNPs detected in D2 | 128 | 11221 | 41 | 9823 |
Ambiguous alleles | 244 | 2047 | 37 | 635 |