Table 3 Summary of the synteny blocks between the B. rapa second generation reference genetic map and the Arabidopsis genome sequence
Synteny block | B. rapa | Arabidopsis | Aligned Arabidopsis | Corresponding genome block identified by | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Aligned position | Aligned | Aligned position | Aligned | length(Kb) | Â | Â | ||||
| Â | length (cM) | length (cM) | per 1 cM of B. rapa | Â | |||||||
| Â | Linkage group | From (cM) | To (cM) | Â | Chromosome | From (Mb) | To (Mb) | Â | Â | Schranz et al. 2006[29] | Parkin et al. 2005[28] |
Block01a | A01 | 2.7 | 52.7 | 50.0 | 4 | 12.3 | 18.6 | 6.2 | 125 | U | C4B |
Block02 | Â | 78.2 | 78.7 | 0.4 | 4 | 8.5 | 8.8 | 0.3 | 683 | T | C4B' |
Block03 | Â | 105.9 | 130.3 | 24.4 | 3 | 1.1 | 7.5 | 6.4 | 260 | F | C3A |
Block04 | A02 | 8.0 | 40.2 | 32.2 | 5 | 1.1 | 5.9 | 4.8 | 150 | R | C5A |
Block05a | A03 | 19.6 | 28.8 | 9.2 | 2 | 12.9 | 18.6 | 5.7 | 618 | J | C2C |
Block06 | Â | 42.6 | 45.0 | 2.4 | 5 | 4.2 | 4.5 | 0.3 | 142 | R | C5A |
Block07 | Â | 49.9 | 52.8 | 2.9 | 3 | 4.5 | 7.8 | 3.3 | 1,168 | F | C3A |
Block08 | Â | 57.2 | 60.1 | 2.9 | 3 | 8.1 | 8.9 | 0.8 | 268 | F | C3A |
Block09a | Â | 63.9 | 67.2 | 3.2 | 2 | 1.6 | 2.2 | 0.6 | 183 | G | C2A |
Block10a | Â | 82.2 | 118.6 | 36.5 | 4 | 8.7 | 17.8 | 9.1 | 249 | T, U | C4B', C4B |
Block11a | A04 | 4.0 | 29.7 | 25.7 | 3 | 19.5 | 23.4 | 3.9 | 152 | N | C3D |
Block12 | Â | 59.4 | 89.9 | 30.5 | 2 | 11.7 | 16.3 | 4.5 | 148 | I, J | C2B, C2C |
Block13a | A05 | 20.0 | 55.1 | 35.1 | 2 | 14.1 | 19.7 | 5.6 | 160 | J | C2C |
Block14a | Â | 59.9 | 98.7 | 38.8 | 3 | 2.5 | 13.3 | 10.8 | 279 | F | C3A |
Block15a | A06 | 40.3 | 68.2 | 27.9 | 1 | 3.5 | 7.4 | 3.9 | 140 | A, B | C1A, C1B |
Block16a | Â | 74.2 | 78.3 | 4.1 | 1 | 6.8 | 7.3 | 0.5 | 118 | B | C1B |
Block17 | Â | 106.6 | 115.0 | 8.5 | 3 | 9.8 | 11.1 | 1.4 | 163 | L | C3B |
Block18 | Â | 117.2 | 120.0 | 2.8 | 2 | 0.2 | 1.0 | 0.9 | 308 | K | C2A |
Block19a | A07 | 19.0 | 34.3 | 15.3 | 1 | 8.8 | 10.9 | 2.1 | 135 | B | C1B |
Block20a | Â | 45.3 | 54.8 | 9.6 | 3 | 20.1 | 22.8 | 2.6 | 276 | N | C3D |
Block21 | Â | 59.5 | 93.3 | 33.8 | 1 | 25.5 | 30.0 | 4.5 | 133 | E | C1E |
Block22 | A08 | 0.0 | 4.0 | 4.0 | 1 | 10.8 | 11.1 | 0.3 | 63 | B | C1B |
Block23a | Â | 4.9 | 42.6 | 37.7 | 4 | 9.9 | 18.4 | 8.5 | 225 | U | C4B |
Block24a | Â | 45.7 | 69.0 | 23.2 | 1 | 4.4 | 10.6 | 6.1 | 264 | A, B | C1A, C1B |
Block25a | A09 | 7.7 | 9.1 | 1.4 | 5 | 15.9 | 19.8 | 3.8 | 2,796 | S, V | C5C, C5D |
Block26 | Â | 37.5 | 49.6 | 12.1 | 1 | 8.4 | 11.2 | 2.8 | 230 | B | C1B |
Block27 | Â | 57.3 | 68.1 | 10.9 | 3 | 18.7 | 22.8 | 4.2 | 383 | N | C3D |
Block28 | Â | 69.2 | 77.0 | 7.9 | 2 | 9.0 | 9.6 | 0.6 | 77 | H, I | C2A, C2B |
Block29 | A10 | 5.3 | 13.8 | 8.5 | 1 | 0.6 | 2.1 | 1.5 | 173 | A | C1A |
Block30 | Â | 38.9 | 72.0 | 33.1 | 5 | 1.6 | 7.2 | 5.6 | 169 | R | C5A |