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Table 2 List of rice homologues of drought responsive Musa transcripts that co-localise with known QTLs for 'drought' and 'cold' in rice.

From: Heterologous oligonucleotide microarrays for transcriptomics in a non-model species; a proof-of-concept study of drought stress in Musa

Rice Abiotic Stress QTLs

Rice Homologues of Drought Responsive Musa transcripts

Arabidopsis Accession

Normalized Expression levels

 

> 2 fold expressed genes

Description

  

QTL-1: cold tolerance

"AQAV003"

Chromosome 1

5556378 -7443721 bp

Os01g10504 - Os1g13360

Os01g10490*

putatitve protein meiosis 5

AT2G42840.1

2.56

 

Os01g10700

D-mannose binding lectin family protein

AT4G32300.1

2.04

 

Os01g10830

carnitine racemase like protein, putative, expressed

AT4G14430.1

2.19

 

Os01g11010

peptide-N4-asparagine amidase A, putative, expressed

AT3G14920.1

0.50

 

Os01g11020

conserved hypothetical protein

AT2G29210.1

2.14

 

Os01g11120

expressed protein

 

2.03

 

Os01g11250

potassium channel KAT1, putative, expressed

AT5G46240.1

0.24

 

Os01g11340*

CYP710A1, putative, expressed

AT2G34500.1

2.53

 

Os01g11620*

esterase precursor, putative, expressed

AT5G26780.1

0.15

 

Os01g11720

Transposable element protein, putative, Transposase_24

 

0.40

 

Os01g12070

endoglucanase 1 precursor, putative, expressed

AT1G64390.1

0.49

 

Os01g12280

protein dimerization, putative, expressed

AT1G79740.1

2.34

 

Os01g12310

histone deacetylase, putative

AT4G38130.1

2.36

 

Os01g12330

expressed protein

AT5G59950.2

2.42

 

Os01g12570

3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed

AT3G61530.1

0.40

 

Os01g12740

cytochrome P450 71A1, putative, expressed

AT3G48290.1

2.27

 

Os01g12810

leaf protein, putative, expressed

AT5G25630.1

4.02

 

Os01g13050

hypothetical protein

AT1G30900.1

2.56

QTL-2: Drought susceptibility

"AQA045/CQ148"

Chromosome 4

413619452 - 13619571 bp

Os04g23890

Os04g23890

phototropin-1, putative, expressed

AT5G58140.3

2.23

QTL-3: drought tolerance

"AQAN001"

Chromosome 5

27321395 - 28590239 bp

Os05g47820 - Os05g50000

Os05g47940

transposon protein, putative, unclassified, expressed

AT3G19430.1

2.15

 

Os05g47980

ATP synthase beta chain, mitochondrial precursor, putative, expressed

AT5G08670.1

2.12

 

Os05g48010

anthocyanin regulatory C1 protein, putative, expressed

AT5G57620.1

0.27

 

Os05g48290

T-complex protein 1 subunit beta, putative, expressed

AT5G20890.1

4.42

 

Os05g48320

60S ribosomal protein L37a, putative, expressed

AT3G60245.1

2.30

 

Os05g48600

galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 putative, expressed

AT1G27600.1

0.44

 

Os05g48750

3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed

AT1G53000.1

2.00

 

Os05g48790

expressed protein

 

2.28

 

Os05g49070

expressed protein

AT1G71180.1

0.27

 

Os05g49160*

negatively light-regulated protein, putative, expressed

AT5G64130.1

2.82

 

Os05g49320

50S ribosomal protein L12-1, chloroplast

precursor, putative, expressed

AT3G27830.1

2.69

 

Os05g49510

expressed protein

AT2G40070.1

2.45

 

Os05g49530

F-box domain containing protein

AT1G16610.1

0.31

 

Os05g49610

expressed protein

AT5G62990.1

0.22

 

Os05g49880

malate dehydrogenase, mitochondrial precursor, putative, expressed

AT1G53240.1

2.03

 

Os05g49910

expressed protein

AT2G25605.1

0.40

QTL-4: cold tolerance

AQDU003

Chromosome 8

]20519931 - 21012373 bp

Os08g33190 - Os08g33790

Os08g33390

HECT domain and RCC1-like domain-containing

protein 2, putative, expressed

AT5G16040.1

2.21

QTL-5: cold tolerance

"CQP8"

Chromosome 11

1491600-1492616 bp

Os11g03794

Os11g03794

Aladin, putative, expressed

AT3G56900.1

3.10

QTL-6: drought

susceptibility

"AQA046/CQA149"

Chromosome 12

26017330-27488769 bp

Os12g42020-Os12g44490

Os12g42180

50S ribosomal protein L14, putative, expressed

AT5G46160.1

2.05

 

Os12g42250

expressed protein

AT1G68360.1

0.43

 

Os12g42380*

expressed protein

AT1G31810.1

0.38

 

Os12g42510

expressed protein

AT1G31810.1

0.38

 

Os12g42560

hypothetical protein

 

0.46

 

Os12g42570

expressed protein

AT3G11760.1

0.22

 

Os12g42884

5-methyltetrahydropteroyltriglutamate-homocysteine

methyltransferase, putative, expressed

AT5G17920.1

2.31

 

Os12g43400

hypothetical protein

 

2.06

 

Os12g43590

FAD binding protein, putative, expressed

AT5G49555.1

0.50

 

Os12g43620

helix-loop-helix DNA-binding domain

containing protein

AT4G37850.1

2.36

 

Os12g44010

purple acid phosphatase precursor, putative, expressed

AT2G16430.2

0.50

 

Os12g44070

protein nitrate and chloride transporter, putative, expressed

AT2G39210.1

2.07

 

Os12g44270

glycine-rich cell wall protein precursor, putative

AT3G22800.1

0.44

 

Os12g44310

9,10-9,10 carotenoid cleavage dioxygenase 1, putative, expressed

AT3G63520.1

2.43

 

Os12g44360

sodium/hydrogen exchanger 7, putative, expressed

AT1G14660.1

5.71

  1. * - indicates genes common to dehydration stress experiments in rice seedlings of Tyagi et al)[48]. Data obtained from the Gene Expression Omnibus (GEO) database at the NCBI website, accession number: GSE 6901
  2. Each QTL described by it's Gramene website QTL accession id, rice map position and the range of genes underlying that QTL.
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BMC Genomics

ISSN: 1471-2164

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