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Table 7 Estimated haplotype effects on EBVs for SCS.

From: Osteopontin: an early innate immune marker of Escherichia coli mastitis harbors genetic polymorphisms with possible links with resistance to mastitis

 

Average haplotype substitution effect (in EBV units of score)a

Haplotypes

SCS

SCS1

SCS2

SCS3

Estimated haplotype effect ± SE ( P value)

H1 (GCGA)

0.118

± 0.268

(0.660)

0.034

± 0.261

(0.896)

0.120

± 0.295

(0.685)

0.173

± 0.333

(0.604)

H2 (GTAC)

0.132

± 0.274

(0.629)

0.061

± 0.266

(0.818)

0.136

± 0.300

(0.650)

0.174

± 0.340

(0.609)

H3 (ACGA)

0.169

± 0.277

(0.541)

0.071

± 0.270

(0.793)

0.177

± 0.305

(0.562)

0.209

± 0.345

(0.545)

H4 (GCGC)

0.023

± 0.276

(0.935)

0.030

± 0.269

(0.913)

0.025

± 0.303

(0.933)

0.071

± 0.343

(0.836)

H5 (GTAA)

0.212

± 0.352

(0.547)

0.090

± 0.339

(0.790)

0.247

± 0.382

(0.518)

0.285

± 0.433

(0.512)

  1. a EBVs are calculated for the respective lactation: over all (SCS), first (SCS1), second (SCS2), and third (SCS3) lactations