Table 2 Mapping bovine CHORI-240 BAC-end sequences to the bovine genome
From: A multiway analysis for identifying high integrity bovine BACs
BAC end sequences | Total | % | correct position | consistent position | correct and consistent position | inconsistent positions | % inconsistent |
|---|---|---|---|---|---|---|---|
expected orientations and within size limit (tail-to-tail) | 55,572 | 40% | 3,826 | 46,295 | 50,121 | 2,932 | 5.3% |
conflicting orientations and/or outside size limit same chromosome | 8,666 | 6.2% | 340 | 6,757 | 7,097 | 938 | 11% |
two different chromosomes (breaks) | 9,4431 | 6.8% | 316 | 6,904 | 7,220 | 1,803 | 19% |
only one BAC end placed on genome (unpaired) | 64,996 | 47% | 3,861 | 44,171 | 48,032 | 9,404 | 14% |
Total | 138,677 | 100% | 8,343 | 104,127 | 112,470 | 15,077 | 11% |