| Â | Functional categoryb |
|---|
Fold change Rangea | Disease & Defense | Signal Transduction | Transcription | Intracellular Traffic | Cell Structure | Metabolism |
|---|
Full | < 0.0001c | < 0.0001 | < 0.0001 | 0.0008 | 0.006 | < 0.0001 |
± 2.0X | 0.03 | 0.0002 | < 0.0001 | 0.002 | < 0.0001 | < 0.0001 |
± 1.5X | 0.34 | 0.018 | < 0.0001 | 0.017 | 0.0003 | < 0.0001 |
± 1.2X | 0.57 | 0.37 | 0.0008 | 0.23 | 0.36 | 0.0004 |
- aThe fold changes were calculated by contrast analysis with SAS Proc Mixed using GC-RMA normalized data. "Full" = full range from the greatest down-regulation to the greatest up-regulation; "± 2.0X" = from down-regulated 2.0x to up-regulated 2.0x; "± 1.5X" = from 1.5x down-regulated to 1.5x up-regulated; "± 1.2X" = from -1.2x down-regulated to 1.2x up-regulated. bFunctional category of each gene drawn from annotation of the Affymetrix soybean GeneChip by the Goldberg group at the University of California, Los Angeles http://estdb.biology.ucla.edu/seed. cp-value obtained by resampling for the Kolmogorov-Smirnov test for distribution differences between a particular functional category and the whole gene set for genes with significant infection responses in the lower court of Sloan; p values were adjusted for FDR by the TST method. Results for other cultivars and infection courts are shown [see Additional file 8].
