From: The effect of sequencing errors on metagenomic gene prediction
GeneMark | MetaGene | MGA | Orphelia | ESTScan | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Error rate | Sens.2 | Spec.3 | Sens.2 | Spec.3 | Sens.2 | Spec.3 | Sens.2 | Spec.3 | Sens.2 | Spec.3 |
0 | 91.0 ± 3.6 | 93.8 ± 4.8 | 95.4 ± 2.8 | 92.8 ± 2.4 | 94.6 ± 2.7 | 94.1 ± 2.5 | 88.4 ± 3.5 | 96.7 ± 1.7 | 81.3 ± 7.8 | 97.9 ± 1.4 |
0.0022 | 85.3 ± 4.2 | 90.4 ± 5.6 | 89.3 ± 3.1 | 89.2 ± 3.5 | 89.6 ± 3.3 | 90.8 ± 2.6 | 80.0 ± 4.2 | 94.7 ± 2.1 | 77.2 ± 9.0 | 97.2 ± 1.5 |
0.0049 | 79.5 ± 4.9 | 87.6 ± 6.4 | 83.7 ± 3.5 | 85.9 ± 3.9 | 84.7 ± 4.0 | 87.7 ± 2.8 | 70.9 ± 5.9 | 92.5 ± 2.1 | 71.7 ± 11.5 | 96.2 ± 1.7 |
0.028 | 36.8 ± 4.9 | 68.3 ± 8.0 | 39.6 ± 3.9 | 60.6 ± 8.8 | 43.3 ± 5.5 | 61.9 ± 3.6 | 26.3 ± 9.1 | 68.3 ± 5.0 | 26.4 ± 11.2 | 86.2 ± 4.7 |