Figure 1

Schematic circular diagram of the S. uberis 0140J genome. Key for the circular diagram: scale (in Mb); annotated CDSs coloured according to predicted function represented on a pair of concentric circles, representing both coding strands; S. uberis unique CDSs, magenta; CDSs with Streptococcal ortholog matches, blue; ortholog matches shared with the Streptococcal species, S. pyogenes Manfredo, S. zooepidemicus H70, S. equi 4047, S. mutans UA159, S. gordonii Challis CH1, S. sanguinis SK36, S. pneumoniae TIGR4, S. agalactiae NEM316, S. suis P1/7, S. thermophilus CNRZ1066; Lactococcus lactis subsp. lactis, green; G + C% content plot; G + C deviation plot (>0% olive, <0% purple). Colour coding for CDS functions: dark blue; pathogenicity/adaptation, black; energy metabolism, red; information transfer, dark green; surface associated, cyan; degradation of large molecules, magenta; degradation of small molecules, yellow; central/intermediary metabolism, pale green; unknown, pale blue; regulators, orange; conserved hypothetical, brown; pseudogenes, pink; phage and IS elements, grey; miscellaneous.