Table 3 Unique genomic positions of conserved Rhs loci in E. coli and Shigella spp.
From: Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement
Locus | Position (bp) | Strand | Upstream gene | ECK# | Downstream gene | ECK# |
|---|---|---|---|---|---|---|
1 | 240500 | F | DNApol III epsilon subunit, dnaQ | 0215 | acyl-CoA dehydrogenase, fadE | 0222 |
2 | 318500 | R | acyl-CoA dehydrogenase, fadE | 0222 | oxidoreductase, ykgE | 0305 |
3 | 523600 | F | ABC transporter, ybbA | 0489 | selenouridine synthase, ybbB | 0496 |
4 | 591800 | R | N4 receptor, nfrB | 0561 | histidine kinase, cusS | 0562 |
5 | 730400 | F | ATPase, kdpA | 0686 | deoxyribodipyrimidine photolyase, phr | 0697 |
6 | 1526800 | F | putative transferase, yncG | 2058 | oxalocrotonate tautomerase, pptA | 2064 |
7 | 2054000 | F | MATE efflux protein, yee0 | 1980 | phosphoribosyl transferase, cobT | 1986 |
8 | 2041000 | F | Cytochrome b561, yodB | 1970 | transcription factor, yeeJ | 1974 |
9 | 3620000 | F | transcriptional repressor, nikR | 3465 | ABC transporter, yhhJ | 3470 |
10 | 3760000 | F | Glutathione S-transferase, yibF | 3581 | Putative membrane protein, yibH | 3586 |
11 | 4125000 | F | Peptidoglycan peptidase, yiiX | 3937 | Primosome assembly protein, priA | 3935 |