Table 4 Summary of 50 conserved syntenies identified by comparison of 95 mate-paired genes of channel catfish with genomic locations of those on the zebrafish draft genome sequence.

035I16

[GenBank:NP_001038735]

[GenBank:XP_689146]

2

38.61

18,048

063L16

[GenBank:NP_001012377]

[GenBank:NP_001092217]

2

19.25

48,679

026B05

[GenBank:XP_001921249]

[GenBank:CAI20867]

3

31.82

4,418

098D05

[GenBank:CAI11873]

[GenBank:NP_001038462]

4

1.82

301,470

007M06

[GenBank:XP_001333162]

[GenBank:NP_571105]

5

5.46

379,579

028M04

[GenBank:XP_687685]

[GenBank:NP_958867]

5

22.23

133,063

074L07

[GenBank:XP_001334912]

[GenBank:XP_687570]

5

15.69

290,598

035N11

[GenBank:NP_001032187]

[GenBank:NP_958882]

6

18.25

231,524

040J24

[GenBank:XP_686613]

[GenBank:NP_991309]

6

7.37

443,524

077F04

[GenBank:NP_001034906]

[GenBank:NP_001038813]

6

11.42

484,877

032F20

[GenBank:XP_691291]

[GenBank:NP_001075159]

7

28.40

244,425

062B16

[GenBank:NP_001008651]

[GenBank:NP_001017550]

7

15.05

222,416

075K10

[GenBank:NP_956505]

[GenBank:NP_001070187]

7

13.34

268,455

103I21

[GenBank:NP_998033]

[GenBank:NP_001159825]

7

22.34

293,845

047N13

[GenBank:XP_699919]

[GenBank:XP_699627]

8

23.84

203,260

057N22

[GenBank:XP_001923800]

[GenBank:NP_997066]

9

36.69

163,677

076H22

[GenBank:NP_001004563]

[GenBank:XP_001921910]

9

13.84

313,352

105N24

[GenBank:NP_001122018]

[GenBank:NP_997992.2]

9

27.37

268,271

056A23

[GenBank:NP_998295]

[GenBank:NP_001103164]

10

7.50

486,745

068C21

[GenBank:NP_001019272]

[GenBank:XP_001920077]

10

17.72

104,067

093K02

[GenBank:XP_001344325]

[GenBank:XP_001919728]

10

41.67

152,479

096A14

[GenBank:NP_001120805]

[GenBank:NP_997775]

11

10.02

980,276

010B15

[GenBank:NP_956715]

[GenBank:NP_956756]

12

25.17

111,625

041B24

[GenBank:NP_001002607]

[GenBank:XP_693784]

12

13.59

398,886

109K22

[GenBank:XP_001920588]

[GenBank:XP_001920550]

12

25.55

449,096

018H11

[GenBank:NP_956915]

[GenBank:NP_997743]

13

23.23

293,181

026C08

[GenBank:NP_001119869]

[GenBank:NP_956611]

13

23.50

201,663

027E09

[GenBank:XP_001922173]

[GenBank:XP_001921791]

14

0.22

574,761

103F19

[GenBank:NP_571477]

[GenBank:XP_001919973]

14

22.90

256,143

022D09

[GenBank:NP_001096112]

[GenBank:XP_684421]

15

29.14

418,219

059B20

[GenBank:XP_682817]

[GenBank:XP_691794]

15

27.80

94,396

077H08

[GenBank:XP_001920240]

[GenBank:NP_001070609]

15

6.05

339,215

004O03

[GenBank:NP_001020707]

[GenBank:NP_001020642]

16

10.40

149,618

075M09

[GenBank:NP_001107266]

[GenBank:NP_001082899]

16

8.30

120,355

104I08

[GenBank:NP_571871]

[GenBank:NP_694503]

16

27.17

214,517

013P16

[GenBank:NP_001076304]

[GenBank:NP_001038173]

18

18.65

366,849

042J20

[GenBank:NP_001037796]

[GenBank:NP_001038370]

18

32.85

223,781

021L13

[GenBank:NP_001038343]

[GenBank:XP_688911]

19

17.40

286,019

052N18

[GenBank:XP_001921158]

[GenBank:NP_956134]

19

7.59

345,553

056A09

[GenBank:NP_001018463]

[GenBank:NP_001038416]

19

13.46

122,217

065M02

[GenBank:XP_001922809]

[GenBank:NP_001038686]

19

15.37

430,325

080O21

[GenBank:NP_956277]

[GenBank:NP_571262]

19

17.06

389,643

086C16

[GenBank:XP_001340912]

[GenBank:NP_001038562]

19

6.00

364,590

010H22

[GenBank:NP_998602]

[GenBank:XP_001920851]

21

2.24

240,019

034I14

[GenBank:NP_001038838]

[GenBank:NP_956334]

21

20.16

306,102

081J10

[GenBank:NP_001002411]

[GenBank:NP_001073439]

21

22.12

277,818

099H22

[GenBank:NP_001076277]

[GenBank:XP_699221]

22

7.03

115,754

053P11

[GenBank:NP_001002173]

[GenBank:NP_001035137]

23

30.73

197,703

068O10

[GenBank:XP_001339131]

[GenBank:XP_689922]

23

18.01

332,973

105H10

[GenBank:NP_001103636]

[GenBank:NP_001098596]

23

33.36

274,318

Average

278,648