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Table 2 Reproducibility of expression of core FeHm stimulon genes

From: The iron/heme regulated genes of Haemophilus influenzae: comparative transcriptional profiling as a tool to define the species core modulon

 

NTHi R2866

Hib 10810

Rd KW20

Locusa

Arrayb

QPCRc

Arrayb

QPCRc

Arrayd

QPCRc

HI0006m

8.36

12.99

7.58

18.00

not on †

9.76

HI0007

7.49

11.02

6.00

9.31

3.40

7.29

HI0017

-8.25

-19.19

-3.03

-14.92

-1.87

-8.08

HI0020

-2.54

-4.81

-1.83

-6.04

-1.75

-2.29

HI0035

-2.46

-1.07

-1.74

-1.71

-1.55

-2.55

HI0075

-2.95

1.03

-2.54

-3.26

-4.03

-10.03

HI0092

-7.26

-2.14

-2.23

-1.51

-2.04

-5.51

HI0095

-12.56

-4.63

-3.93

-7.42

-10.21

-23.17

HI0097

-14.27

-38.00

-4.52

-67.60

-8.15

-39.73

HI0113

-4.72

-2.06

-2.28

-4.77

-2.36

-2.56

HI0157

2.18

3.29

1.52

3.71

1.55

3.64

HI0173

3.07

3.54

1.68

2.23

1.90

2.32

HI0185

5.86

38.95

4.01

41.06

8.04

30.77

HI0206

-2.25

-2.18

-2.09

-4.89

-1.60

-2.53

HI0230

2.91

5.42

2.51

3.10

2.31

2.67

HI0244

2.59

10.47

1.87

3.13

2.30

4.51

HI0251

-1.99

1.18

-1.69

-3.12

-2.75

-1.16

HI0252

-2.45

1.15

-1.87

-3.90

-3.02

-2.56

HI0257

-2.27

-5.52

-1.52

-8.86

-1.61

-2.32

HI0262

-24.69

-13.38

-4.03

-5.95

-10.30

-26.93

HI0263

-29.31

-38.82

-3.29

-8.69

-9.20

-25.57

HI0319

2.76

4.47

1.54

2.83

1.96

2.88

HI0324

2.04

4.58

1.80

2.00

1.63

2.34

HI0584

-1.84

-1.83

-1.59

-2.09

-1.69

-3.39

HI0591

-11.40

-11.89

-13.78

-7.63

-3.84

-4.78

HI0623

2.51

8.29

2.07

3.76

1.62

2.75

HI0669

-2.08

1.02

-1.72

-1.98

-1.67

-2.18

HI0689

-4.96

-3.71

-1.85

-2.94

-1.53

-2.93

HI0691

-5.71

-3.95

-3.40

-7.87

-1.61

-1.98

HI0809

-6.41

-2.41

-3.16

-3.58

-2.87

-5.29

HI0863

-2.00

-1.66

-1.88

-1.57

-1.51

-1.39

HI0864

1.89

7.42

1.91

4.39

1.71

3.97

HI0878

1.70

4.99

2.00

3.80

1.96

2.55

HI0980

4.67

6.68

2.56

5.56

2.06

7.82

HI0994

-9.56

-3.83

-8.16

-26.02

-12.40

-23.55

HI0997m

-15.68

-18.62

-14.61

-11.49

not on †

-10.70

HI0999

1.66

5.65

1.62

2.75

1.68

3.99

HI1051

3.02

6.10

2.44

3.16

1.80

4.32

HI1069

8.33

5.87

2.53

6.96

2.13

3.89

HI1094

2.53

1.44

1.60

1.94

1.81

1.66

HI1174m

-2.06

-1.93

-1.75

-3.22

not on †

-2.78

HI1210

-5.29

-3.18

-2.68

-6.57

-2.47

-4.41

HI1214

1.92

2.21

2.40

2.33

1.74

2.99

HI1228

-3.35

-2.91

-1.50

-2.55

-1.62

-1.73

HI1282

2.87

6.73

3.13

4.16

1.96

6.62

HI1349

-4.12

-7.53

-3.70

-25.61

-1.53

-5.48

HI1359

-3.28

-2.74

-3.10

-5.00

-1.73

-2.49

HI1384

3.21

9.31

2.01

5.38

2.60

4.76

HI1398

-5.25

-3.55

-2.98

-5.80

-2.32

-3.82

HI1427

-6.60

-1.42

-2.32

-1.90

-6.12

-11.91

HI1706

3.24

14.28

3.39

5.81

3.14

12.76

HI1733

3.23

7.99

2.89

3.27

1.81

2.71

  1. a The gene locus in Rd KW20
  2. b Fold change between the FeHm unsupplemented and supplemented sample from the microarray
  3. c Fold change between the FeHm unsupplemented and supplemented sample by Q-PCR of an independent experiment.
  4. d Fold change between the FeHm unsupplemented and supplemented sample by Q-PCR of the Rd KW20 previously published by Whitby et al. [25]
  5. † not present on Rd array, but inclusion in the core verified by Q-PCR of array samples
  6. Values in plain italic text show a disagreement in regulatory status between the microarray and Q-PCR data.