Sympatric ecological speciation meets pyrosequencing: sampling the transcriptome of the apple maggot Rhagoletis pomonella

Table 2 Contigs and single reads of Rhagoletis pomonella candidate chemoreceptors†.

Match	CG	aa.	%I	bp	Read/Contig	Source
OR 22c	15377	33	51.0	116	E7OMS0H04JIN70	P
OR 43a	1854	82	53.7	249	E7OMS0H02EYJ4G	H
OR 49a	13158	43	44.0	283	EZ4BI6301E5Z3B*	B
OR 49b	1758	76	65.8	231	C11063 (2)	H
OR 83a	10612	66	51.5	244	E7OMS0H02EEYGV	H
OR 94a	17241	34	52.0	134	E7OMS0H01BOR2 M	B
OR 94b	6679	58	43.1	214	E7OMS0H04H6HYT	P
IR 25a	15627	85	90.0	266	EZ4BI6301FWMUT‡	B
		78	77.0	280	EZ4BI6301EI8 MK	B
IR 92a	15685	38	76.0	247	EZ4BI6301FTL6Z	B
GR 43a	1712	80	60.0	242	E7OMS0H02EBJ2S	H
		37	56.8	146	EY1FUWY01BWJL1	H
		19	85.0	290	EZ4BI6301FFA7L	B
GR 64b	32257	21	66.7	222	E3CVG0K02EHCM3	H

†Contigs and reads matching the same D. melanogaster locus map to different regions of the Drosophila gene. Match is the D. melanogaster locus name for the closest match, CG is the Celera Genome number of the match, aa is the number of amino acids in the single read or contig, %I is the percent aa match between the R. pomonella and D. melanogaster homologous proteins, bp is the base pair length of the single read or contig, Read/Contig is the R. pomonella identifier in our data base, GenBank is the GenBank accession number, and So. is source (Larva, Pupa, Head, or Body). Number of reads assembled in contig is in parenthesis.
*Also matches an EST fragment of an OR from a congener, R. suavis (ABW80750.1) at 100% I; see also GenBank EU204908.1.
‡A second fragment, EZ4BI6301FZM98, was identical but shorter (contained entirely within EZ4BI6301FWMUT).

ISSN: 1471-2164