Table 2 Genes with highest GEI
Locus | Gene namea | EGD-e locusb | Description | 10403S Average GEIc |
|---|---|---|---|---|
LMRG_04519 | ssrA | NL | transfer-messenger RNA (tmRNA) | 8566.2 |
LMRG_04503 | ssrS | NL | 6S RNA | 7921.4 |
Noncoding | lhrA | NL | Hfq-binding RNA | 4532.3 |
Noncoding | sbrE | NL | putative ncRNA | 2359.9 |
LMRG_01574d | lmo2257 | lmo2257 | hypothetical CDS | 2066.3 |
LMRG_02041 | fri | lmo0943 | non-heme iron-binding ferritin | 1572.6 |
LMRG_04515 | NGN | NL | bacterial signal recognition particle RNA | 1462.2 |
LMRG_02926e | NGN | NL | - | 1407 |
LMRG_00994 | lmo1847 | lmo1847 | similar to adhesion binding proteins and lipoproteins with multiple specificity for metal cations (ABC transporter) | 1378.9 |
LMRG_00378 | flaA | lmo0690 | flagellin protein | 1366.9 |
LMRG_04523 | rnpB | NL | bacterial RNAse P class B | 1243.8 |
LMRG_01165 | cspB | lmo2016 | similar to major cold-shock protein | 1109.5 |
Noncoding | NGN | NL | T-box leader | 1086.7 |
LMRG_00891 | sod | lmo1439 | superoxide dismutase | 845.4 |
LMRG_00996 | lmo1849 | lmo1849 | similar to metal cations ABC transporter, ATP-binding proteins | 827.4 |
LMRG_01986 | lmo2711 | lmo2711 | similar to hypothetical proteins | 802.1 |
LMRG_00921 | lmo1468 | lmo1468 | similar to unknown proteins | 738.5 |
LMRG_02618 | lmo0196 | lmo0196 | similar to B. subtilis SpoVG protein | 702.9 |
LMRG_00814 | cspL | lmo1364 | similar to cold shock protein | 679.4 |
LMRG_01081 | hup | lmo1934 | similar to non-specific DNA-binding protein HU | 631.8 |
LMRG_00995 | lmo1848 | lmo1848 | similar metal cations ABC transporter (permease protein) | 621.2 |
LMRG_00922 | rpsU | lmo1469 | 30S ribosomal protein S21 | 609 |
LMRG_02619 | lmo0197 | lmo0197 | similar to B. subtilis SpoVG protein | 577.3 |
Noncoding | NGN | NL | putative ncRNA | 561.9 |
LMRG_00679 | trxA | lmo1233 | thioredoxin | 516.5 |
LMRG_01674 | lmo2158 | lmo2158 | similar to B. subtilis YwmG protein | 509.2 |
LMRG_02633 | ctc | lmo0211 | similar to B. subtilis general stress protein | 496.4 |
LMRG_01479 | lmo2363 | lmo2363 | similar to glutamate decarboxylase | 491 |
LMRG_00517 | pdhD | lmo1055 | highly similar to dihydrolipoamide dehydrogenase, E3 subunit of pyruvate dehydrogenase complex | 483.5 |
LMRG_00703 | lmo1254 | lmo1254 | similar to alpha,alpha-phosphotrehalase | 395.9 |
LMRG_02718 | lmo2373 | lmo2373 | similar to phosphotransferase system beta-glucoside-specific enzyme IIB component | 378.5 |
LMRG_01737 | lmo2511 | lmo2511 | similar to B. subtilis YvyD protein | 377.1 |
LMRG_00515 | pdhB | lmo1053 | highly similar to pyruvate dehydrogenase (E1 beta subunit) | 356.4 |
LMRG_00704 | lmo1255 | lmo1255 | similar to PTS system trehalose-specific enzyme IIBC | 353.6 |
LMRG_00516 | pdhC | lmo1054 | highly similar to pyruvate dehydrogenase (dihydrolipoamide acetyltransferase E2 subunit) | 351.3 |
LMRG_01480 | lmo2362 | lmo2362 | similar to amino acid antiporter (acid resistance) | 351.1 |
LMRG_02239 | lmo2692 | lmo2692 | unknown | 344.1 |
LMRG_00875 | lmo1423 | lmo1423 | unknown | 341.2 |
LMRG_01835 | lmo2413 | lmo2413 | similar to aminotransferase | 333.1 |
LMRG_01429 | lmo1541 | lmo1541 | similar to unknown protein | 318.8 |