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Table 3 General Blastn results

From: MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana

 

Perfect match

1 mismatch

Total

 

Nb

Reads

Nb

Reads

Nb

%

Reads

Silencing RNAs

miRNA

71

209

14

22

85

0.7

231

TAS genes

41

65

8

8

49

0.4

73

Candidate silencing RNAs

Protein-coding genes

2114

2487

423

1025

2537

19.4

3512

Transposon

172

178

51

71

223

1.7

249

Pseudogenes

15

33

5

5

20

0.2

38

Non-protein coding RNAs

rRNA

2305

4396

232

258

2537

19.4

4654

tRNA

737

7568

173

811

910

7

8379

snoRNA

20

21

1

1

21

0.2

22

snRNA

6

7

1

1

7

0

8

Other RNAs

26

56

7

8

33

0.2

64

Organellar small RNAs

Mitochondrial

58

84

42

47

100

0.8

131

Chloroplastic

16

26

19

26

35

0.3

52

Intergenic regions

4933

9540

627

746

5560

42.6

10286

Undetermined

735

1620

196

280

931

7.1

1900

  1. Sequences with 0 or 1 mismatch with the Arabidopsis genome were compared with the intergenic and "genic" databases. Some matched silencing RNAs (miRNAs and TAS genes), candidate silencing RNAs (protein-coding genes or transposons), non-protein coding RNAs (mainly rRNAs and tRNAs) and organellar small RNAs. Other sequences either matched intergenic regions, or could not be assigned to either region. Nb: number of unique sequences
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BMC Genomics

ISSN: 1471-2164

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