A genomic glimpse of aminoacyl-tRNA synthetases in malaria parasite Plasmodium falciparum

BMC Genomics

Table 1 Results of database searches by HMM models of aaRS^@.

cutoff	HMM^Ala	HMM^Arg	HMM^Asn	HMM^Asp	HMM^Cys	HMM^Gln	HMM^Glu	HMM^Gly	HMM^His	HMM^Ile
c > 50	PF13_0354	PFL0900c	PFE0475w*	PFB0525w*	PF10_0149	PF13_0170	MAL13P1.281	PF14_0198	PF14_0428	PF13_0179
20< c < 50			PFB0525w*	PFA0145c PFE0475w*		PF13_0257*	PF13_0257*		PFI1645c
10< c < 20			PFE0715w*
5< c <10		PFI0680c		PFE0715w*						PFL1210w
Cutoff	HMM ^Leu	HMM ^Lys	HMM ^Met	HMM ^Phe	HMM ^Pro	HMM ^Ser	HMM ^Thr	HMM ^Trp	HMM ^Tyr	HMM ^Val
c > 50	PF08_0011	PF13_0262	PF10_0340	PFA0480w	PFL0670c	PF07_0073	PF11_0270	PF13_0205	MAL8P1.125	PF14_0589
20< c < 50	PFF1095w	PF14_0166	PF10_0053	PFF0180w	PFI1240c	PFL0770w		PFL2485c	PF11_0181
10< c < 20				PFL1540c PF11_0051
5< c <10

* hits with more than one assignment to HMM model.
^@Two proteins PF14_0401 and PFC0470w were not found by HMMs which were annotated as tRNA binding protein and ValRS in PlasmoDB respectively.

ISSN: 1471-2164