Table 2 Box H/ACA snoRNAs in chicken

GGgACA1

2

133

5.8S-55

7+5 nt (5')

U72

RPL30 (intron 3);

EST CK607839 (intron 1)³

28S-3342

7+5 nt (5')

E2/ACA8

GGgACA2

1

131

5.8S-69

8+4 nt (5')

Pus7p

U69

RPL39 (intron 2)

GGgACA3

1

135

18S-34

6+6 nt (5')

snR44

ACA50/ACA62

CNOT1 (intron 16)

18S-105

6+3 nt (3')

snR44

ACA36/B/ACA50/ACA62

GGgACA4

3

131

18S-36

7+4 nt (5')

U69/ACA55

PABPC4 (intron 6,7,10)

GGgACA5

1

131

18S-36

4+5 nt (3')

U69/ACA55

ENSGALESTG00000033205 (intron 7)

18S-783

6+3 nt (3')

snR161

ACA44

28S-3926

5+6 nt (3')

ACA1

GGgACA6

1

135

18S-120

4+6 nt (5')

snR49

U66

UBAP2L (intron 14)

28S-1612

3+7 nt (5')

snR8

ACA56

28S-3333

5+6 nt (5')

snR9

ACA58/B

GGgACA7

1

128

18S-209

7+5 nt (5')

ACA28/ACA31

ENSGALESTG00000032755 (intron 5)

28S-3223

6+7 nt (3')

ACA31

GGgACA8

1

134

18S-367

8+3 nt (3')

snoR86

U71a/b/c/d

PRS17 (intron 3)

GGgACA9

1

135

18S-610

5+8 nt (5')

ACA46

CNOT1 (intron 24)

GGgACA10

1

131

18S-612

3+7 nt (5')

ACA20

TCP1(intron 9)

U2-91

8+4 nt (5')

GGgACA11

1

132

18S-761

7+5 nt (5')

ACA25

ENSGALESTG00000033205 (intron 12)

GGgACA12

1

131

18S-774

6+5 nt (5')

ACA25/ACA63

RANBP1 (intron 5)

GGgACA13

1

132

18S-782

7+5 nt (5')

snR161

ACA44

RPL21 (intron 4)

28S-3204

8+6 nt (5')

ACA27

GGgACA14

1

130

18S-775

8+5 nt (5')

snR80

snoR91

ACA28

CCT6A (intron 3)

U12-19

7+4 nt (3')

ACA68

GGgACA15

1

127

18S-775

7+4 nt (5')

snR80

snoR91

ACA28

EIF5 (intron 5)

18S-824

7+4 nt (3')

ACA28

GGgACA16

1

130

18S-821

5+7 nt (5')

ACA24

mRNA CR389003 (intron 1)

GGgACA17

1

131

18S-821

7+7 nt (5')

ACA24

EIF3S10 (intron 9)

28S-1710

6+3 nt (5')

ACA7B

28S-3128

6+5 nt (3')

snoR87

ACA19

28S-3219

6+6 nt (5')

ACA19

GGgACA18

1

122

18S-927

3+6 nt (5')

ACA14b/a

CNOT1 (intron 31)

U2-58

3+8 nt (3')

GGgACA19

1

128

18S-1132

10+3 nt (5')

ACA40

UBAP2 (intron 27)

GGgACA20

1

127

18S-1132

7+4 nt (3')

ACA40

ENSGALESTG00000033205 (intron 6)

GGgACA21

1

136

18S-1196

8+6 nt (3')

snR85

ACA5/5b/c

AP2B1 (intron 1)³

18S-1197

7+7 nt (3')

ACA5/5b/c

GGgACA22

2

141

18S-1196

8+3 nt (5')

snR85

ACA5/5b/c

TBRG4 (intron 2,6)

18S-1197

7+4 nt (5')

ACA5/5b/c

18S-1580

7+4 nt (3')

ACA5/5b/c

GGgACA23

1

135

18S-1196

7+3 nt (5')

snR85

ACA5/5b/c

TBRG4 (intron 7)

GGgACA24

2

132

18S-1202

9+3 nt (5')

snR36

ACA36/B

DKC1 (intron 6);

RFWD2 (intron 13)

GGgACA25

1

133

18S-1206

5+6 nt (5')

snR35

ACA13

EST BU236609 (intron 2)

GGgACA26

1

128

18S-1305

7+5 nt (3')

snR83/RUF3

ACA4

EIF4A2 (intron 9)

GGgACA27

1

132

18S-1400

8+6 nt (5')

U67

DKC1 (intron 10)

28S-1612

9+4 nt (5')

snR8

ACA56

GGgACA28

1

133

18S-1598

7+5 nt (5')

ACA41

EEF1B2 (intron 4)

GGgACA29

1

147

28S-1612

6+3 nt (5')

snR8

ACA56

CHD4 (intron 33)

U5-43

4+6 nt (3')

ACA57

GGgACA30

1

130

28S-1612

6+4 nt (3')

snR8

ACA56

EIF4A2 (intron 8)

28S-3875

4+5 nt (3')

E3

28S-3976

4+7 nt (5')

snR37

SNORA82/ACA10

GGgACA31

1

130

28S-1618

5+5 nt (5')

snR43

ACA9

mRNA CR391354 (intron 2)

28S-1701

6+4 nt (3')

snR33

ACA9

GGgACA32

1

132

28S-1664

6+7 nt (5')

snR5

snoR81

ACA52

RPLP2 (intron 2)

GGgACA33

1

138

28S-1699

6+4 nt (5')

HBI-115

mRNA CR523168 (intron 1)

GGgACA34

1

123

28S-1781

7+4 nt (5')

snR5

ACA32

ENSGALESTG00000033205 (intron 11)

GGgACA35

1

134

28S-2269

8+3 nt (5')

ACA61

EST CK986810 (intron 3)

GGgACA36

1

156

28S-3126

5+6 nt (5')

snR3

ACA6

RPSA (intron 3)

28S-3886

5+5 nt (5')

ACA21

GGgACA37

1

123

28S-3128

5+5 nt (3')

snoR87

ACA19

EIF3S10 (intron 8)

U6-86

6+5 nt (5')

ACA65

GGgACA38

1

134

28S-3223

9+5 nt (3')

ACA31

ENSGALESTG00000032755 (intron 6)

GGgACA39

2

127

28S-3311

4+7 nt (5')

ACA54

NAP1L4 (intron 7,9)

GGgACA40

1

153

28S-3340

6+5 nt (5')

E2

RPSA (intron 4)

GGgACA41

1

131

28S-3409

7+3 nt (5')

ACA3

RPL27A (intron 3)

GGgACA42

1

130

28S-3448

5+4 nt (3')

ACA3

RPL27A (intron 2)

GGgACA43

1

132

28S-3751

8+4 nt (5')

IR

28S-3816

3+6 nt (3')

ACA23

GGgACA44

2

145

28S-3754

6+3 nt (3')

ACA34

KIAA2013 (intron 1); IR

GGgACA45

1

131

28S-3886

6+5 nt (5')

ACA21

RPL23 (intron 3)

28S-3955

6+4 nt (3')

snR10

snoR74

ACA21

GGgACA46

1

135

28S-3858

7+3 nt (5')

U65

RPL12 (intron 4)

28S-3912

6+5 nt (3')

snR34

U65

U65

GGgACA47

1

136

28S-4393

5+4 nt (5')

U64/ACA22

RPS2 (intron 5)

GGgACA48

1

139

U2-34

5+4 nt (5')

U92

C14orf159 (intron 1)

GGgACA49

1

129

U2-39

7+4 nt (3')

ACA26

mRNA CR523821 (intron 1)

U2-41

6+7 nt (5')

ACA26

GGgACA50

1

129

U2-43

7+7 nt (3')

U92

RCJMB04_9g9 (intron 12)

U2-44

7+8 nt (3')

U92

GGgACA51

1

129

U2-54

6+3 nt (3')

U93

EST BU127305 (intron 2)

U5-53

6+4 nt (5')

U93

GGgACA52

1

147

U6-86

6+4 nt (3')

ACA65

HTR2C (intron 1)³

Orphan box H/ACA snoRNAs

GGoACA1

1

136

RPL18A (intron 2)

GGoACA2

1

130

ACA18

ENSGALESTG00000033205 (intron 9)

GGoACA3

1

138

ACA8

ENSGALESTG00000033205 (intron 10)

GGoACA4

1

137

U100

TIPIN (intron 6)

GGoACA5

1

126

KIAA0907 (intron 6)

GGoACA6

1

131

ACA29

TCP1 (intron 1)

GGoACA7

1

129

GARNL1 (intron 4)

GGoACA8

1

140

CWF19L1 (intron 12)

GGoACA9

1

131

NOL5A (intron 3)

GGoACA10

1

132

WHSC1 (intron 17)