Table 1 Genomic sequences used in the comparative analysis of Vibrionaceae and the calculated number of lineage specific genes in each genome. The inter-genomic search yielded a core genome comprised of 1,882 orthologous proteins
Strains | Accession ID | No. Genes in genome | No. Protein coding genes | % core in genome | No. Families with LSE | No. LSE genes | % LSEs in genome | |
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | Lineage unique | Typical LSE | Â | Â |
V. cholerae N16961 | NC_002505 (chr1) NC_002506 (chr2) | 4009 | 3887 | 48.86 | 11 | 16 | 59 | 1.54 |
V. cholerae O395 | NC_009456 (chr 1) NC_009457 (chr 2) | 3998 | 3878 | 49.05 | 49 | 25 | 153 | 3.95 |
V. parahaemolyticus RIMD 2210633 | NC_004603 (chr1) NC_004605 (chr2) | 4708 | 4548 | 42.17 | 24 | 30 | 109 | 2.40 |
V. vulnificus CMCP6 | NC_004459 (chr1) NC_004460 (chr2) | 4796 | 4796 | 39.82 | 16 | 24 | 121 | 2.52 |
V. vulnificus YJ016 | NC_005139 (chr1) NC_005140 (chr2) NC_005128 (plasmid) | 4897 | 4758 | 40.08 | 11 | 26 | 83 | 1.74 |
V. harveyi ATCC BAA-1116 | NC_009783 (chr 1) NC_009784 (chr 2) NC_009777 (plasmid) | 6238 | 6040 | 31.79 | 97 | 56 | 665 | 11.01 |
V. splendidus LGP32 | NC_011753 (chr 1) NC_011744 (chr 2) | 4604 | 4431 | 43.35 | 13 | 56 | 165 | 3.72 |
A. fischeri MJ11 | NC_011184 (chr 1) NC_011186 (chr 2) NC_011185 (plasmid) | 4175 | 4039 | 47.49 | 10 | 17 | 56 | 1.39 |
A. fischeri ES114 | NC_006840 (chr1) NC_006841 (chr2) NC_006842 (plasmid) | 4038 | 3882 | 49.48 | 3 | 19 | 50 | 1.29 |
A. salmonicida LFI1238 | NC_011312 (chr 1) NC_011313 (chr 2) NC_011314 (plasmid) NC_011315 (plasmid) NC_011316 (plasmid) | 4352 | 3839 | 49.99 | 12 | 47 | 248 | 6.48 |
Photobacterium profundum SS9 | NC_006370 (chr 1) NC_006371 (chr 2) NC_005871 (plasmid) | 5702 | 5489 | 35.20 | 90 | 87 | 551 | 10.04 |