Improving gene expression similarity measurement using pathway-based analytic dimension

BMC Genomics

Table 2 Top 10 scoring profiles for test profile GSM12641(liver) with cross-platform search database

Scoring method	Similarity score	Profile ID	Cell type	Platform ID	Study ID
CGSEP	0.31	GSM19143	colon	GPL97	GSE1152
	0.3	GSM19142	ileum	GPL97	GSE1152
	0.28	GSM11827	kidney	GPL97	GSE781
	0.25	GSM11810	kidney	GPL97	GSE781
	0.24	GSM4230	skeletal	GPL246	GSE465
	0.24	GSM4231	skeletal	GPL246	GSE465
	0.23	GSM18443	cardiac	GPL570	GSE1145
	0.22	GSM18809	placenta	GPL1074	GSE1133
	0.22	GSM18798	prostate	GPL1074	GSE1133
	0.22	GSM18711	leukocyte	GPL1074	GSE1133
PEPC	0.43	GSM2831	liver	GPL91	GSE96
	0.43	GSM12640	liver	GPL92	GSE803
	0.43	GSM2854	trachea	GPL91	GSE96
	0.42	GSM2858	spleen	GPL91	GSE96
	0.42	GSM18949	lung	GPL96	GSE1133
	0.42	GSM18950	lung	GPL96	GSE11750
	0.42	GSM2835	spleen	GPL91	GSE96
	0.42	GSM2844	liver	GPL91	GSE96
	0.41	GSM2834	salivary	GPL91	GSE96
	0.41	GSM12718	liver	GPL8300	GSE803

ISSN: 1471-2164