Figure 2
From: DNA-binding residues and binding mode prediction with binding-mechanism concerned models
A difficult case (PDB ID 1LMB:4) of binding residue prediction, which can be enhanced with the best aligned template of correct predicted protein-DNA binding mode. Residues colored by red means false positive. Residues colored by blue means false negative. Residues colored by green means true positive. (a) Prediction of sequence-specific binding residues. (b) Prediction of non-specific binding residues. (c) Combination of sequence-specific and non-specific binding residues prediction. (d) Enhanced prediction with the best aligned template of correct protein-DNA binding mode prediction.