Table 6 Protein-DNA binding modes and their corresponding Pfam domains
From: DNA-binding residues and binding mode prediction with binding-mechanism concerned models
Protein-DNA Binding mode | Pfam Domain |
|---|---|
Zipper-type | HLH |
| Â | bZIP_1 |
| Â | bZIP_2 |
Helix-turn-helix | HTH_AraC |
| Â | TetR_N |
| Â | Trp_repressor |
| Â | Homeobox |
| Â | E2F_TDP |
| Â | GntR |
| Â | Fe_dep_repress |
| Â | Ets |
| Â | HTH_3 |
| Â | Sigma70_r4 |
| Â | LacI |
| Â | Fork_head |
| Â | Resolvase |
| Â | Pou |
Zinc-coordinating | zf-C4 |
| Â | zf-C2H2 |
| Â | Zn_clus |
| Â | GATA |
| Â | P53 |
β-hairpin/ribbon | MetJ |
| Â | RHH_1 |
| Â | Arc |
Others | SRF-TF |
| Â | Runt |
| Â | PAX |
| Â | RHD |
| Â | Autoind_bind |
| Â | cNMP_binding |