Table 1 Top 50 known genes in TW germinomas.

207522_s_at

Hs.513870

ATPase; Ca++ transporting; ubiquitous

ATP2A3

chr17p13.3

1552487_a_at

Hs.459153

basonuclin 1

BNC1

chr15q25.2

219928_s_at

Hs.511983

calcium binding tyrosine-(Y)-phosphorylation regulated

CABYR

chr18q11.2

219578_s_at

Hs.547988

cytoplasmic polyadenylation element binding protein 1

CPEB1

chr15q25.2

1564491_at

Hs.590784

chromosome X open reading frame 18

CXorf18

chrXq27.2

206588_at

Hs.131179

deleted in azoospermia-like

DAZL

chr3p24.3

228057_at

Hs.480378

DNA-damage-inducible transcript 4-like

*DDIT4L

chr4q23

221630_s_at

Hs.223581

DEAD (Asp-Glu-Ala-Asp) box polypeptide 4

DDX4

chr5p15.2-p13.1

220004_at

Hs.125507

DEAD (Asp-Glu-Ala-Asp) box polypeptide 43

DDX43

chr6q12-q13

220493_at

Hs.98586

doublesex and mab-3 related transcription factor 1

DMRT1

chr9p24.3

232985_s_at

Hs.317659

developmental pluripotency associated 4

*DPPA4

chr3q13.13

210868_s_at

Hs.412939

ELOVL family member 6; elongation of long chain fatty acids

*ELOVL6

chr4q25

1555299_s_at

---

endogenous retroviral family W; env(C7); member 1 (syncytin)

ERVWE1

chr7q21-q22

1553614_a_at

Hs.652066

hypothetical protein FLJ25694

FLJ25694

chr13q21.31

207899_at

Hs.1454

gastric inhibitory polypeptide

GIP

chr17q21.3-q22

227711_at

Hs.524476

gametocyte specific factor 1

*GTSF1

chr12q13.2

219863_at

Hs.26663

hect domain and RLD 5

*HERC5

chr4q22.1

209398_at

Hs.7644

histone cluster 1; H1c

HIST1H1C

chr6p21.3

214455_at

Hs.553506

histone cluster 1; H2bc

HIST1H2BC

chr6p21.3

223861_at

Hs.298312

HORMA domain containing 1

HORMAD1

chr1q21.2

217522_at

Hs.660831

potassium channel; subfamily V; member 2

KCNV2

chr9p24.2

219955_at

Hs.685462

LINE-1 type transposase domain containing 1

L1TD1

chr1p31.3

220665_at

Hs.242183

leucine zipper protein 4

LUZP4

chrXq23

205668_at

Hs.153563

lymphocyte antigen 75

LY75

chr2q24

229475_at

Hs.651245

maelstrom homolog (Drosophila)

MAEL

chr1q24.1

207534_at

Hs.73021

melanoma antigen family B; 1

MAGEB1

chrXp21.3

206218_at

Hs.113824

melanoma antigen family B; 2

MAGEB2

chrXp21.3

214397_at

Hs.25674

methyl-CpG binding domain protein 2

MBD2

chr18q21

204580_at

Hs.1695

matrix metallopeptidase 12 (macrophage elastase)

*MMP12

chr11q22.3

204702_s_at

Hs.404741

nuclear factor (erythroid-derived 2)-like 3

NFE2L3

chr7p15-p14

229352_at

Hs.657932

sperm equatorial segment protein 1

*SPESP1

chr15q23

209626_s_at

Hs.520259

oxysterol binding protein-like 3

OSBPL3

chr7p15

204879_at

Hs.468675

podoplanin

*PDPN

chr1p36.21

210265_x_at

Hs.450254

POU class 5 homeobox 1 pseudogene 3

*POU5F1(OCT4)

chr12p13.31

225579_at

Hs.274415

PQ loop repeat containing 3

PQLC3

chr2p25.1

204086_at

Hs.30743

preferentially expressed antigen in melanoma

PRAME

chr22q11.22

218700_s_at

Hs.115325

RAB7; member RAS oncogene family-like 1

RAB7L1

chr1q32

1558668_s_at

Hs.351068

spermatogenesis associated 22

*SPATA22

chr17p13.3

223883_s_at

Hs.309767

serine/threonine kinase 31

STK31

chr7p15.3

1553599_a_at

Hs.506504

synaptonemal complex protein 3

SYCP3

chr12q

39318_at

Hs.2484

T-cell leukemia/lymphoma 1A

TCL1A

chr14q32.1

206413_s_at

Hs.510368

T-cell leukemia/lymphoma 1B

TCL1B

chr14q32.1

215356_at

Hs.646351

tudor domain containing 12

TDRD12

chr19q13.11

223530_at

Hs.144439

tudor and KH domain containing

TDRKH

chr1q21

227642_at

Hs.156471

Transcription factor CP2-like 1

TFCP2L1

chr2q14

228505_s_at

Hs.487510

transmembrane protein 170

TMEM170

chr16q23.1

208275_x_at

Hs.458406

undifferentiated embryonic cell transcription factor 1

UTF1

chr10q26

1553197_at

Hs.371738

WD repeat domain 21C

WDR21C

chr8q21.3

230193_at

Hs.709837

WD repeat domain 66

WDR66

chr12q24.31

243161_x_at

Hs.335787

zinc finger protein 42 homolog (mouse)

ZFP42

chr4q35.2