Comparative analysis of fungal protein kinases and associated domains

Kosti, Idit; Mandel-Gutfreund, Yael; Glaser, Fabian; Horwitz, Benjamin A

doi:10.1186/1471-2164-11-133

BMC Genomics

Table 1 Species included in the kinome analyses.

From: Comparative analysis of fungal protein kinases and associated domains

	Fungal species	Abbreviation	Phylum/Subphylum/Class*	Database	Genome Paper
1	Ascosphaera apis	Aapis_as	Ascomycota/P/E	Baylor/NCBI	[31]
2	Aspergillus clavatus	Aclavatus_as	Ascomycota/P/E	NCBI Protein	[32]
3	Aspergillus fumigatus	Afumigatus_as	Ascomycota/P/E	Broad Institute	[28, 33]
4	Aspergillus nidulans	Anidulans_as	Ascomycota/P/E	Broad Institute	[28, 33]
5	Aspergillus niger	Aniger_as	Ascomycota/P/E	NCBI Protein	[34]
6	Aspergillus oryzae	Aoryzae_as	Ascomycota/P/E	Broad Institute	[28, 33]
7	Coccidioides immitis	Cimmitis_as	Ascomycota/P/E	Broad Institute	[35]
8	Fusarium graminearum	Fgraminearum_as	Ascomycota/P/So	Broad Institute	[36]
9	Histoplasma capsulatum.	Hcapsulatum_as	Ascomycota/P/E	Broad Institute	[35]
10	Magnaporthe oryzae (grisea)	Mgrisea_as	Ascomycota/P/So	Broad Institute	[37]
11	Neurospora crassa	Ncrassa_as	Ascomycota/P/So	Broad Institute	[38]
12	Neosartorya fischeri	Nfischeri_as	Ascomycota/P/E	Venter	[32]
13	Penicillium chrysogenum	Pchrysogenum_as	Ascomycota/P/E	NCBI Protein	[39]
14	Stagonospora nodorum	Snodorum_as	Ascomycota/P/D	JGI	[40]
15	Sclerotinia sclerotiorum	Ssclerotiorum_as	Ascomycota/P/L	Broad Institute	In preparation
16	Trichoderma reesei	Treesei_as	Ascomycota/P/So	JGI	[41]
17	Uncinocarpus reesii	Ureesii_as	Ascomycota/P/E	Broad Institute	[35]
18	Cryptococcus neoformans	Cneoformans_ba	Basidiomycota/A	Broad Institute	[42]
19	Laccaria bicolor	Lbicolor_ba	Basidiomycota/A	JGI	[43]
20	Malassezia globosa	Mglobosa_ba	Basidiomycota/U	NCBI Protein	[44]
21	Phanerochaete chrysosporium	Pchrysosporium_ba	Basidiomycota/A	JGI	[45]
22	Ustilago maydis	Umaydis_ba	Basidiomycota/U	Broad Institute	[46]
23	Ashbya (Eremothecium) gossypii	Agossypii_he	Ascomycota/S	NCBI Protein	[47]
24	Candida albicans	Calbicans_he	Ascomycota/S	Broad Institute	[48]
25	Candida glabrata	Cglabrata_he	Ascomycota/S	Genolevures	[49]
26	Debaromyces hansenii	Dhansenii_he	Ascomycota/S	Genolevures	[49]
27	Kluyveromyces lactis	Klactis_he	Ascomycota/S	Genolevures	[49]
28	Pichia stipitis	Pstipitis_he	Ascomycota/S	JGI	[50]
29	Saccharomyces cerevisiae	Scereviseae_he	Ascomycota/S	SGD	[51]
30	Schizosaccharomyces pombe	Spombe_as	Ascomycota/T	Sanger	[2]

Taxonomy follows [18] and [21]. Saccharomycotina (Ascomycete yeasts) are often referred to as Hemiascomycota and we have retained the tag _he in the abbreviated species names in the figures, for simplicity.
*Subphylum: U, Ustilaginomycotina; A, Agaricomycotina; P, Pezizomycotina; S, Saccharomycotina; T, Taphrinomycotina; Class: So, Sordariomycetes; L, Leotiomycetes, E, Eurotiomycetes; D, Dothideomycetes.

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ISSN: 1471-2164

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