Comparative assessment of methods for estimating individual genome-wide homozygosity-by-descent from human genomic data

Table 3 Descriptive statistics of various homozygosity estimates and marker sets in the Vis Island dataset

Method	Mean	St. deviation	Range	Minimum	Maximum
MLH	0.354	0.005	0.040	0.325	0.365
MLH, M0.1	0.390	0.006	0.044	0.360	0.405
MLH, M0.05	0.360	0.005	0.042	0.329	0.371
F_PLINK	0.009	0.014	0.116	-0.021	0.094
F_PLINK, M0.1	0.009	0.014	0.112	-0.021	0.090
F_PLINK, M0.05	0.009	0.016	0.110	-0.026	0.084
F_ADC	0.009	0.015	0.112	-0.021	0.091
F_ADC, M0.1	0.009	0.014	0.113	-0.023	0.083
F_ADC, M0.05	0.008	0.016	0.109	-0.026	0.083
FEstimSPT	0.007	0.011	0.083	0.000^a	0.083
FEstimSPT, M0.1	0.008	0.012	0.079	0.000^a	0.079
FEstimSPT, M0.05	0.008	0.011	0.084	0.000^a	0.084
FEstim, M0.1	0.017	0.010	0.086	0.000^a	0.086
FEstim, M0.05	0.009	0.011	0.080	0.000^a	0.080

ISSN: 1471-2164