Large-scale transcriptome data reveals transcriptional activity of fission yeast LTR retrotransposons

BMC Genomics

Table 1 Data sets of LTR sequence sets and other genomic features

Genomic features	Seqs^a	Total size (bp)	HybMap probes^b	RNA-Seq reads^c
LTRs
Full-length LTR elements	13	63855	1032^d	901^d
Solitary LTRs	214	67938	1298	817^d
Background
Intergenic	3206	2796112	59528	300955
Intronic	943	177104	4380	6939
RNA genes
tRNAs	170	13130	28	290
snoRNAs	23	4073	91	2941
Highly expressed protein-coding genes
Histone proteins	12	12964	422	8672
Ribosomal proteins	124	62661	1794	236760
Lowly expressed protein-coding genes
Repair genes (rec and rad)	43	82258	2860	10833

a) Number of sequences in set
b) HybMap 60-mers mapping to sequence sets. Both forward and reverse strand probes included.
c) RNA-Seq sequence reads from growth stage mapping to sequence sets.
d) Number provided is probes and reads mapping exclusively within sequence sets (otherwise these are mapping uniquely)

ISSN: 1471-2164