Table 3 Expression of zebra finch MHC genes in seven different tissues expressed as number of transcripts per million (TPM) [57].
From: Digital gene expression analysis of the zebra finch genome
Gene | Brain, EST | Embryo | Liver | Muscle | Skin | Spleen | Testes | Ï„ |
|---|---|---|---|---|---|---|---|---|
TUBB | 21.7 | 3.1 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | - |
TRIM7.2 | 97.8 | 0.0 | 0.0 | 3.1 | 0.0 | 0.0 | 0.0 | 0.833 |
TRIM39 | 0.0 | 0.0 | 2.5 | 0.0 | 4.0 | 6.9 | 3.3 | 0.519 |
TRIM27 | 10.9 | 3.1 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | - |
Ii | 76.1 | 182.2 | 323.2 | 887.5 | 241.7 | 4,060.4 | 250.2 | 0.336 |
Class I | 130.4 | 6.2 | 106.9 | 18.4 | 31.7 | 1,695.0 | 110.1 | 0.497 |
CIITA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 10.4 | 0.0 | - |
CD1A | 0.0 | 0.0 | 2.5 | 0.0 | 0.0 | 55.6 | 0.0 | 0.817 |
BRD2 | 21.7 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | - |
B2M | 10.9 | 0.0 | 45.8 | 9.2 | 27.7 | 896.1 | 43.4 | 0.602 |
Library size | 92,040 | 323,897 | 392,890 | 325,646 | 252,349 | 287,902 | 299,755 | Â |