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Table 1 Down- and upregulated genes in KTR cell line compared to wild type control

From: Acetylation of p65 at lysine 314 is important for late NF-κB-dependent gene expression

RefSeq RNA

Gene symbol

Gene name

Fold change

P-value

XR_001627

A630026L20

Hypothetical protein A630026L20

0.188

9.40E-30

NM_029000

Gvin1

GTPase, very large interferon inducible 1

0.26

8.04E-09

NM_024435

Nts

Neurotensin

0.262

5.50E-10

NM_133871

Ifi44

Interferon-induced protein 44

0.282

0.001

NM_146015

Efemp1

Epidermal growth factor-containing fibulin-like extracellular matrix protein 1

0.286

2.31E-20

NM_145153

Oas1f

2'-5' oligoadenylate synthetase 1F

0.349

0.000045

NM_199015

D14Ertd668e

DNA segment, Chr 14, ERATO Doi 668, expressed

0.368

0.000005

NM_145211

Oas1a

2'-5' oligoadenylate synthetase 1A

0.369

0.001

NM_172603

Phf11

PHD finger protein 11

0.371

3.08E-07

NM_009099

Trim30

Tripartite motif protein 30

0.378

0.001

NM_183249

1100001G20Rik

RIKEN cDNA 1100001G20 gene

0.395

8.10E-07

NM_030150

Dhx58

DEXH (Asp-Glu-X-His) box polypeptide 58

0.413

0.000006

NM_021394

Zbp1

Z-DNA binding protein 1

0.419

0.000443

NM_008690

Nfkbie

Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon

0.422

0.000005

XM_001000862

I830012O16Rik

RIKEN cDNA I830012O16 gene

0.422

0.002

NM_021792

Iigp1

Interferon inducible GTPase 1

0.427

0.000001

NM_194336

Mpa2l

Macrophage activation 2 like

0.435

0.039

NM_007969

Expi

Extracellular proteinase inhibitor

0.436

0.000025

NM_029000

Gvin1

GTPase, very large interferon inducible 1

0.438

0.000024

NM_009099

Trim30

Tripartite motif protein 30

0.454

0.000002

NM_011909

Usp18

Ubiquitin specific peptidase 18

0.458

0.002

NM_029803

Ifi27l2a

Interferon, alpha-inducible protein 27 like 2A

0.46

0.000163

NM_029803

Ifi27l2a

Interferon, alpha-inducible protein 27 like 2A

0.462

0.000471

NM_008200

H2-D4

Histocompatibility 2, D region locus 4

0.483

0.000006

NM_010501

Ifit3

Interferon-induced protein with tetratricopeptide repeats 3

0.488

0.000741

NM_153564

Gbp5

Guanylate binding protein 5

0.493

0.000843

NM_013606

Mx2

Myxovirus (influenza virus) resistance 2

0.509

0.000002

NM_198095

Bst2

Bone marrow stromal cell antigen 2

0.511

0.000046

NM_009318

Tapbp

TAP binding protein

0.511

0.004

NM_172777

BC057170

cDNA sequence BC057170

0.519

0.000028

NM_018734

Gbp3

Guanylate binding protein 3

0.52

0.000867

NM_001001892

H2-K1

Histocompatibility 2, K1, K region

0.522

7.26E-07

NM_011579

Tgtp

T-cell specific GTPase

0.522

0.000163

NM_008198

Cfb

Complement factor B

0.523

0.000011

NM_010395

H2-T10

Histocompatibility 2, D region locus 1

0.527

0.000001

NM_007936

Epha4

Eph receptor A4

0.528

0.001

NM_010545

Cd74

CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)

0.532

2.94E-09

NM_008331

Ifit1

Interferon-induced protein with tetratricopeptide repeats 1

0.532

0.002

NM_001001892

H2-K1

Histocompatibility 2, K1, K region

0.533

5.43E-08

NM_028749

Npl

N-acetylneuraminate pyruvate lyase

0.533

0.000004

NM_010380

H2-D1

Histocompatibility 2, D region locus 1

0.533

0.000007

NM_015783

Isg15

ISG15 ubiquitin-like modifier

0.534

0.008

NM_173743

2310016F22Rik

RIKEN cDNA 2310016F22 gene

0.535

0.000166

NM_011314

Saa2

Serum amyloid A 2

0.536

3.53E-07

NM_008330

Ifi47

Interferon gamma inducible protein 47

0.542

0.000013

NM_172826

Dact2

Dapper homolog 2, antagonist of beta-catenin (xenopus)

0.544

0.008

NM_021384

Rsad2

Radical S-adenosyl methionine domain containing 2

0.547

0.005

NM_001143689

H2-gs10

MHC class I like protein GS10

0.55

0.000007

NM_009155

Sepp1

Selenoprotein P, plasma, 1

0.552

1.58E-14

XM_126677

Dnahc17

Dynein, axonemal, heavy chain 17

3.081

2.80E-45

  1. List of down- and upregulated genes in KTR cell line compared to wild type control after 3 hours of TNFα treatment, as measured by whole genome arrays. Average values from at least two biological replicates are shown.
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BMC Genomics

ISSN: 1471-2164

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