Age-related molecular genetic changes of murine bone marrow mesenchymal stem cells
© Wilson et al; licensee BioMed Central Ltd. 2010
Received: 26 April 2009
Accepted: 7 April 2010
Published: 7 April 2010
Mesenchymal stem cells (MSC) are pluripotent cells, present in the bone marrow and other tissues that can differentiate into cells of all germ layers and may be involved in tissue maintenance and repair in adult organisms. Because of their plasticity and accessibility these cells are also prime candidates for regenerative medicine. The contribution of stem cell aging to organismal aging is under debate and one theory is that reparative processes deteriorate as a consequence of stem cell aging and/or decrease in number. Age has been linked with changes in osteogenic and adipogenic potential of MSCs.
Here we report on changes in global gene expression of cultured MSCs isolated from the bone marrow of mice at ages 2, 8, and 26-months. Microarray analyses revealed significant changes in the expression of more than 8000 genes with stage-specific changes of multiple differentiation, cell cycle and growth factor genes. Key markers of adipogenesis including lipoprotein lipase, FABP4, and Itm2a displayed age-dependent declines. Expression of the master cell cycle regulators p53 and p21 and growth factors HGF and VEGF also declined significantly at 26 months. These changes were evident despite multiple cell divisions in vitro after bone marrow isolation.
The results suggest that MSCs are subject to molecular genetic changes during aging that are conserved during passage in culture. These changes may affect the physiological functions and the potential of autologous MSCs for stem cell therapy.
Mesenchymal stem cells (MSCs) are pluripotent cells that have been reported to reside in virtually all postnatal organs and tissues (reviewed in [1–3]). They are defined by their ability to adhere to plastic, to differentiate into bone, cartilage and fat, and by expression of specific sets of cell-surface markers. The apparent plasticity of MSCs within the bone marrow and their similarity to subendothelial pericytes have lead to suggestions that these two cell types are closely related and possibly even the same . Pericytes and actively proliferating MSCs both express alpha-smooth muscle actin (α-SMA), a marker of vascular smooth muscle cells, and both cell types reside within the domain of the microcirculation [3–7]. The pluripotential nature of MSCs has been demonstrated in vitro and in vivo. When systemically injected, mouse MSCs migrate to multiple tissues and differentiate into parenchymal cells of muscle, cartilage, skin, bone, liver, heart, brain, intestine and lung [8–19]. In vitro, defined conditions promote the differentiation of MSCs into skeletal muscle, endothelial cells, neurons, and cardiac myocytes in addition to bone, cartilage and fat [20–22]. It has been proposed that MSCs contribute to tissue and organ repair and have therapeutic potential in the regeneration or repair of multiple target tissues . Several clinical trails have been launched to evaluate MSCs for the treatment of musculoskeletal, neurological and cardiovascular diseases [24, 25].
The process of MSC aging is important from the perspective of tissue regeneration and repair because there is evidence that these beneficial functions may become handicapped with age. Age-related decline in the number of MSCs in the bone marrows of rodents, monkeys, and humans have been reported [26–33]. Most studies to date focused on the effects of aging on the ability of MSCs to enter osteogenic, chondrogenic and adipogenic programs. Some, but not all studies suggest that aging reduces osteogenesis and chondrogenesis while enhancing adipogenic potential [34–40]. These changes could provide an attractive explanation for the increased adiposity of bone marrow that is seen with age, and may be a factor in senile osteoporosis [41, 42]. Other studies including some on humans suggest that the adipogenic potential of MSCs increases at mid-age but declines in old age . Programs of senescence have been extensively studied particularly during passage of human MSCs, and these may provide clues to the mechanism of age-related decline of MSCs in the bone marrow . However it is not known how aging affects growth factor, cell cycle or tumor suppressor genes despite the possible relevance to senescence and self-renewal. In fact to date there has been no comprehensive effort to analyze the effect of age on global gene expression of non-committed MSCs. In the present study, we harvested bone marrow from mice aged 2, 8, and 26 months, and obtained homogenous populations of MSCs from each age group. Comparisons of the transcription profiles of these MSCs reveal significant age-related changes in the expression of more than 8000 genes. We found that marker genes associated with adipogenic and osteogenic differentiation displayed a generalized decline with age. There were parallel declines of the cell cycle inhibitors p53 and p21, and the growth factors VEGF and HGF. These observations suggest that molecular genetic changes accumulate in bone marrow MSCs during aging that may affect functions, including differentiation and proliferation of these cells.
Cell culture and isolation
Mesenchymal stem cells (MSCs) were isolated from C57BL/6 WT mice aged 2, 8 and 26 months as described . Briefly, femur and tibia were removed from both legs, four mice per age group, and the bone marrow flushed with culture medium using a syringe needle. The cells were filtered through a 70-micron strainer and centrifuged at 210 g for 10 minutes. Red Blood Cell Lysis Buffer (Sigma) was added, and the cells were plated on Falcon tissue culture plates in mouse mesenchymal stem cell basal media with supplements (Stem Cell Technologies, Va). Non-adherent cells were removed by rinsing and replacing the media after 48 hours and culture medium was replaced every 3 days. At 10 days post-harvest, the cells were removed with 0.25% Trypsin-EDTA solution (Gibco) and replated on new culture plates at a dilution of 1:2 (passage 1). Non-detached cells were discarded. Media was replaced twice weekly and cells were grown for 10 passages before harvest.
Cells were resuspended at a density of 1.5 × 106 cells/mL in PBS containing 2% fetal bovine serum, 2 mM EDTA, and 0.1% sodium azide (FACS Buffer) and incubated at 4°C for 20 minutes with APC-or PE-conjugated antibodies against cell surface markers Sca-1, CD44, CD45, and CD11b (from Pharmingen, SanDiego, CA). Labeled cells were centrifuged, resuspended in 0.5 ml of FACS buffer, and analyzed using an LSRS1 flow cytometer and quantified with CELLQuest software.
Passage 11 MSCs from each age group were harvested at the same degree of confluence using identical procedures. RNA was purified using TriReagent (Sigma), and Qiagen RNeasy columns following the manufacturer's instructions. RNA integrity and concentration were analyzed by agarose-gel electrophoresis, UV NanoDrop spectrophotometry.
Equal amounts of RNA from 4 animals per age group were combined to generate a pooled sample for each experimental group. The pooled RNA samples were labeled for hybridization to the Affymetrix Mouse Genome 430 2.0 GeneChip Array, using standard Affymetrix protocols. This chip contains roughly 39,000 transcripts. A total of 11 chips were run including triplicates of 2-month samples and quadruplicates of 8 month and 12 month samples. Arrays were pre-hybridized with 1× Hybridization Buffer for 10 minutes at 45°C. The labeled samples were added to the GeneChip Arrays and hybridized for 16 hours at 45°C. The arrays were stained and washed according to Affymetrix Fluidics Station 450 protocol EukGEWS2v5_450. The intensity values were collected from the GeneChips by scanning the arrays with a GeneChip Scanner 3000 7G. The resultant images were analyzed with the MAS5 algorithm for quality control checks. Pearson correlation coefficients taken from plotting signal intensity values of duplicate chips across all genes validated that triplicate experiments were similar (typical correlation coefficients for previous double amplification experiments have been r2 ~.988). Chip intensity values were calculated using the gcrma algorithm. Chips were normalized with the quantile normalization procedure. Normalized expression values from the raw data were generated using default settings for the GC-Robust Multi-array Average (GC-RMA) method that provides the best balance of accuracy and precision  within GeneSpring (Silicon Genetics, Redwood City, CA). Subsequent statistical analysis was also performed in GeneSpring. The cross-gene error model was applied with replicates. The acceptance criterion for gene array expression changes was a minimum fold change of 2.0 and a t-test p-value of < 0.05. Venn diagrams and scatter plots were generated within GeneSpring.
Western blots were performed using previously described protocols . Briefly, equal amounts of proteins were fractionated on 10% SDS-polyacrylamide gels and electroblotted to nitrocellulose (BioRad, Hercules, CA). Blots were stained with Ponceau Red to monitor the transfer of proteins. Membranes were blocked with 5% milk and incubated with p53 and actin antibodies (Santa Cruz Biotechnology, Santa Cruz, CA) overnight at 4°C. Blots were reacted with horseradish peroxidase-conjugated secondary antibodies and visualized by enhanced chemiluminescence (ECL, Pierce, Rockford, IL).
RNA was reverse-transcribed using an RT2 PCR Array First Strand Kit (SuperArray, Frederick, MD) with random hexamers according to the manufacturer's instructions. Power SYBR Green PCR Master Mix (Applied Biosystems, Foster City, Ca) was used according to manufacturer's instructions. The reaction mixtures were run in 96-well RT2 ProfileTM PCR arrays (Mouse Cancer Pathway Finder and Mouse Osteogenic Pathway Finder, also from SuperArray) each containing primers for 90 genes. Detection was performed using an ABI Prism 7900HT FAST Sequence Detector System, and data analysis was carried out using the software provided. Cycle thresholds for each transcript (Ct) were related to the relative standard curve. Ct values were compared from different age groups and the mean and standard errors were calculated from two separate RNA extractions run in duplicate. Statistical analysis was carried out using a standard T-test.
Osteogenesis: confluent monolayers of each cell group were incubated in osteoblast differentiation media containing DMEM-low glucose (Gibco), 10% heat-inactivated FBS, 1% penicillin-streptomycin, 10 mM beta-glycerophospate, 0.1 μM dexamethasone, and 0.2 mM ascorbic acid 2-phosphate . The culture media was replaced every 3 days and after 14 days the cells were fixed with 4% paraformaldehyde and stained with Alizarin Red S (Sigma). Adipogenesis: confluent monolayers of each cell group were incubated in adipogenic induction medium consisting of DMEM-low glucose (Gibco) supplemented with 10% heat-inactivated fetal bovine serum (FBS), 1% penicillin-streptomycin, 1 μM dexamethasone, 0.5 mM IBMX, 100 μM indomethacin, and 10 Mg/mL insulin. After 6-days the medium was switched to adipogenesis maintenance media consisting of basal media 10% heat-inactive FBS, 1% penicillin-streptomycin, and insulin. Cultures were alternated weekly between induction media and maintenance media for 2 more weeks and then fixed in 4% paraformaldehyde and stained with Oil-Red-O (Sigma). Control plates were incubated in parallel with DMEM-low glucose supplemented with 10% heat inactivated FBS and 1% penicillin-streptomycin and subjected to the same fixing and staining procedures.
Characterization of Bone Marrow Mesenchymal Stem Cells
Age-related decline of MSC osteogenic differentiation
Distinct non-overlapping trends in gene expression during phases of aging
Age-related trends in differentiation, growth factor and cell cycle genes by cluster analysis
Differentially expressed genes between 2 and 8 months
A series of osteogenic, homeobox, and integrin gene transcripts decreased significantly between 2 and 8-months, see Table 1 (Additional File 1). The osteogenic markers included, osteoadherin (20-fold), periostin osteoblast specific factor (20-fold), osteoglycin (7-fold), osteonectin (4-fold), osteonitogen (4-fold), and osteoblast stimulating factor (2-fold). Down-regulated integrins included, integrin α-4 (62-fold by RT-PCR), α-6 (5-fold), α-8 (10-fold), α-10 (5-fold), and β-1 (3-fold by RT-PCR); integrin linked kinase (ilk) and Adams-5 also decreased by 3-fold. Adams are transmembrane proteins that have metalloprotease, integrin-binding, intracellular signaling and cell adhesion activities . Down-regulated homeobox genes included homeobox msh-like (50-fold), homeobox B2 (30-fold), paired-related homeobox (30-fold), homeobox B6 (25-fold), homeobox 5 (10-fold), and HoxB9 (15-fold). The levels of TGFβ signaling pathway transcripts TGF-β2 and the receptor endoglin increased. Endoglin is an accessory receptor for several growth factors of the TGFβ family that is expressed in adult bone marrow hematopoietic stem cells [53, 54]. IGF-1BP3 and IGF-2BP4 transcripts were also increased between 2 and 8 months. There were increases of lipoprotein lipase (Lpl) and collagen type-VIIa (Col7a). Lpl is a marker of adipogenesis; Col7a is a component of the epidermal basement membrane .
Differentially expressed genes between 8 and 26 months
Table 2 (Additional File 2) shows the top 80 down-regulated transcripts in the aging (8-26 mo) group. These include 3 glutathione-S-transferase genes and glutathione peroxidase, suggesting possible down-regulation of this anti-oxidant pathway. There were also 3 separate hits for serine (or cysteine) proteinase inhibitor (clades A, B and E), calcium-activated chloride channels, and solute carrier family-38 genes. The osteogenic and homeobox markers, that declined between 2-8 months remained depressed at 26 and the levels of two key adipogenesis marker genes Lpl and FABP4 decreased markedly between 8 and 26-months. Gene transcripts that were significantly increased between 8 and 26 months included H-cadherin, Col7a, and several bone morphogenic protein (BMP) gene family transcripts including BMP2 (3.8-fold), BMP3 (2.5-fold), BMP4 (6.5-fold), Bmp receptor 1b (3-fold), BMP2 inducible kinase (3-fold), BMP activation membrane bound inhibitor (Bambi, 20-fold), and BMP-binding endothelial receptor (Bmper, 10-fold).
Cell cycle regulators and apoptosis
We compared global gene transcriptional profiles of uncommitted bone marrow derived mesenchymal stem cells from mice at 3 different ages and across 2 intervals of the murine lifespan. Changes of gene expression occurring between 2 and 8 months have little in common with those between 8 and 26 months. The small overlap of down-regulated transcripts (87/2111) and no overlap of up-regulated genes (0/2547), is consistent with the biologically distinct stages represented by these time periods that correspond roughly to young, mature, and aged. An important and novel aspect of this study is that distinctive patterns of gene expression were apparent between the cells despite 11 passages and culture for 6-weeks in defined MSC proliferation medium. The cells were cultured in parallel under identical conditions, harvested at the same degree of confluence and displayed homogeneity as reflected by similar cell-surface markers at the time of RNA isolation. Therefore, it seems likely that the differences in transcript profiles are age-related and reflect molecular genetic modifications that are retained during cell division.
Despite reciprocal changes in the transcript levels of multiple genes including those associated with TGF-β and IGF-1 signaling pathways over the 2-8 month and 8-26 month periods, there was an overall trend of decreased osteogenic and adipogenic marker expression over the entire 2- to 26-month period of aging. The increase of Lpl transcripts apparent between 2 and 8 months was lost at 26 months in parallel with a dramatic decline of FABP4 transcripts. The osteogenic and homeobox markers that declined between 2 and 8 months remained depressed at 26 month. Several bone morphogenic protein (BMP) family transcripts including BMP-2, -3 and -4, Bmp receptor-1b, and BMP activation membrane bound inhibitor were elevated at 26 months. However multiple other osteogenic markers that declined in the 2-8 month age group did not recover. Integrins and smooth muscle-related transcripts (α-SMC and γ-SMC) decreased during 2-8 months and increased again at 26 months, whereas transcripts of Sfrp1, a key component of Wnt signaling, and a possible modulator of osteogenic versus adipogenic differentiation  decreased progressively. These results are consistent with declines in osteogenic and perhaps adipogenic potential with age, although passage number may be more important than age for the latter. The results are also consistent with previous reports that osteogenesis and adipogenesis decline with age and passage of murine MSCs [48–51]. The situation may be different in humans where MSCs from aged subjects display more rapid senescence in culture, but do not appear to have reduced osteogenic or adipogenic differentiation potentials at least at early passage in culture [57–59].
As noted above, only 86 gene transcripts were down regulated over the entire 2-26 month period. Importantly, these down-regulated transcripts included multiple cell cycle and growth factor genes. VEGF, HGF and IGF-1 were all significantly decreased in MSCs from 26-month old mice relative to cells from either 2 or 8-months (Figure 12). RT-PCR confirmed 4- and 3-fold decreases of VEGF-A and -C respectively, 272-fold decrease of HGF, and 22-fold decrease of IGF-1 transcripts over 2-26 months (Figure 13). ELISA further confirmed the decrease of VEGF secretion of cells from aged mice (Figure 14. The extensive decrease of HGF transcripts suggests that basal expression of the HGF gene is largely extinguished in cells from aged mice. Such changes may adversely affect both the survival and angiogenic potential of MSCs from aged bone marrow. This in turn might negatively influence the repair functions as well as the therapeutic potential of these cells, particular as they relate to wound healing and treatment of cardiovascular disease where neo-angiogenesis is essential.
The decreased expression of the p53/p21 cell cycle checkpoint pathway in 26-month MSCs was confirmed by RT-PCR and western blot. P53 is normally stabilized when cells are exposed to conditions that promote DNA damage when it translocates to the nucleus and activates the transcription of p21 (cyclin-dependent kinase inhibitor-1a) . P21 inhibits the cyclin-dependent kinase 2 (CDK2) causing cell cycle arrest in G1. If DNA is successfully repaired, p53 is degraded and cell division can be restarted. In somatic cells the p53/p21 pathway is progressively activated during aging as telomeres are lost and cells accumulate DNA damage, eventually promoting senescence . Conversely, the p53-pathway is inactive in >50% of oncogenically transformed cells accounting at least in part for the resistance of these cell to senescence . In embryonic stem cells (ESC) p53 is expressed at low levels and does not induce p21 because translocation to the nucleus is blocked (reviewed in 63). Therefore ESCs also evade p53-mediated senescence. Genome integrity in ESCs is maintained by enhanced telomerase activity, efficient DNA repair, and highly active p53-independent apoptosis . Our observations that aged MSC lost expression of p53 and p21, as well CHEK2, may explain how these cells avoid age-related senescence. Loss of Rb1 may also contribute to this; Rb, p21 and p53 are all required for replicative senescence of primary somatic cells [65, 66]. These results may also be quite relevant to oncogenesis; an age-related loss of p53 may predispose these cells to oncogenic transformation, perhaps generating cancer stem cells . Aging is a well-established risk factor for oncogenesis [68, 69]. The relevance of Flt1 induction is not clear, however it has been reported that bone marrow derived hematopoietic progenitor cells that express high levels of Flt1 have an enhanced potential to home to tissues that express VEGF .
There have been conflicting reports on the effect of age on the adipogenic potential of MSC (reviewed in [1–3]). Muraglia et al  isolated 185 clones of human MSCs and showed that 184 of these differentiated along an osteogenic lineage, whereas fewer clones showed chondrogenic or adipogenic potential, and the potentials of the latter decreased with passage number. MSC from human adipose were also reported to become more osteogenic at late passage . Other studies suggest that age affects senescence but not differentiation potential of human MSCs [57–59]. MSC from rats rapidly loose chondrogenic potential during aging from immature to mature or old, and this is paralleled by lower basal expression of related genes . There is also evidence that mesenchymal stem cells committed to an adipogenic program can be induced to trans-differentiate to the osteogenic pathway and vice versa . Moreman et al  reported recently that freshly isolated bone marrow of 26-month old mice contains significantly greater numbers of cells committed to the adipogenic lineage than does the bone marrow of 8-month mice. These changes were paralleled by increased adipogenic and decreased osteogenic marker gene transcripts. These studies do not necessarily conflict with our findings because Moreman et al studied freshly isolated cells whereas we used passaged cells. Culture in vitro may eliminate or reverse the programming of cells that are committed at the time of isolation . We found that transcript levels of osteogenic markers decreased between 8 and 26 months whereas adipogenic markers increased at 8-months but decreased at 26-months. Differentiation studies were consistent with a biological consequence of these changes (Figure 2). These trends are reminiscent of the aging process in humans where adiposity tends to increase at mid-age while both adiposity and osteogenicity decrease during old age [72, 73]. Of note mice aged 8-months are equivalent to a human age between 30-40 whereas a 26-month old mouse is equivalent to >70 human years .
Our studies indicate dramatic changes in the expression of multiple genes during aging with some of the greatest fluctuations represented by adipogenic and osteogenic markers, growth factors and cell cycle regulator genes. Major trends included higher adipogenic gene markers and lower osteogenic markers at 8-months compared with 2-months, loss of adipogenic markers at 26-months, and globally decreased transcripts for growth factors and cell cycle regulators p53 and p21 over the entire aging period. The results suggest that maturation and aging of the bone marrow define distinctive gene expression patterns that effect both tissue-specific and housekeeping genes. The loss of growth factor, survival, and cell cycle control genes implies that aged MSCs may loose some of their migration and repair properties while avoiding age-induced senescence. The retention of age-determined expression profiles of tissue specific genes during passage in vitro suggests that certain gene sets may be irreversibly affected by aging in vivo, such that they are refractive to reprogramming signals after isolation.
Supported by grants # HL072924 and #HL44578 from the National Institutes of Health and by a Walter G. Ross Distinguished Chair in Vascular Biology (KAW).
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