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Table 1 Replicon localization and classification of sRNA candidates

From: A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

  

Deep sequencing

Microarray experiments

RNA type

sub type

chromosome

pSymA

pSymB

chromosome

pSymA

pSymB

trans-encoded sRNA

1

9

3

4

90

113

61

 

2

90

19

26

265

281

175

 

-*

11

8

3

   
 

all

173

985

cis-encoded antisense sRNA

1

8

3

6

8

9

8

 

2

12

4

9

114

230

243

 

3

30

4

16

21

20

18

 

1/3

1

1

2

0

0

0

 

all

96

671

mRNA leader

 

298

31

49

90

65

95

 

all

378

250

sense sRNA

1

17

5

6

   
 

2

221

27

37

   
 

3

89

5

14

   
 

4

9

0

3

   
 

1/3

7

0

2

   
 

1/4

2

0

0

   
 

2/4

1

1

1

   
 

all

447

   

open reading frame

 

8

0

0

   
 

all

8

   
  1. RNA type and subtype: Class of transcripts according to the classification in Figure 3. Replicon: C, chromosome; A, pSymA; B, pSymB. Number: number of identified sRNAs per class, subclass and replicon. *Candidates derived from Illumina/Solexa sequencing that did not allow for identifying the DNA strand. Therefore, subclassification is missing for these candidates.
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BMC Genomics

ISSN: 1471-2164

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