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Table 8 Distribution of motifs across mosaic classes

From: Most transcription factor binding sites are in a few mosaic classes of the human genome

Transcription factor

Mosaic classes

 

Pair 2

Pair 7

Pair 9

Pair 14

Total

GABP

0.133

0.102

0.058

0.021

0.314

NRSF

0.176

0.148

0.096

0.011

0.430

SRF

0.131

0.033

0.009

0.001

0.173

NFKB

0.211

0.108

0.058

0.008

0.385

TCF7L2

0.125

0.039

0.009

0.001

0.175

SREBP1

0.198

0.101

0.074

0.014

0.387

GATA1

0.079

0.027

0.006

0.001

0.112

TR4

0.180

0.097

0.046

0.005

0.328

ZNF263

0.055

0.099

0.052

0.010

0.216

cFos

0.183

0.094

0.042

0.002

0.322

Max

0.141

0.079

0.060

0.010

0.290

NF-E2

0.159

0.090

0.037

0.002

0.288

YY1

0.111

0.045

0.016

0.002

0.174

STAT1

0.160

0.039

0.012

0.002

0.213

CTCF

0.159

0.168

0.164

0.041

0.532

sp1

0.082

0.152

0.182

0.074

0.491

p53

0.182

0.126

0.086

0.013

0.406

Average of above

0.145

0.091

0.059

0.013

0.308

  1. This table gives the proportion of motifs in the class pair for each transcription factor: the value has been derived from artificial sequences and adjusted for the relative proportion of bases in each class in the human genome. This table is to be compared with Table 2 which gives the distribution of actual binding sites.
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BMC Genomics

ISSN: 1471-2164

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