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Table 5 Identification of transcription factor binding sites (TFBSs) present in TFAP2A- modulated genes by opossum.

From: Identification of functional TFAP2A and SP1 binding sites in new TFAP2A-modulated genes

TFAP2A-regulated genes

OPOSSUM matrix (Jaspar CORE)

TF

Target genes

p (Fisher test)

Z-score

DOWN n = 157

MA0079

SP1

95

2.19E-05

17.47

 

MA0048

NHLH1

44

7.09E-05

14.76

 

MA0006

Arnt-Ahr

99

3.21E-02

14.25

 

MA0056

MZF1_1-4

119

4.44E-02

11.27

 

MA0018

CREB1

45

9.48E-03

10.63

UP n = 107

MA0014

Pax5

12

3.31E-03

9.98

 

MA0102

Cebpa

41

6.67E-03

8.20

 

MA0042

FOXI1

35

2.12E-01

8.00

 

MA0135

Lhx3

32

2.11E-01

7.74

 

MA0047

Foxa2

35

1.93E-01

7.73

  1. For each TF its Positional Weight Matrix (PWM) numbers, abbreviated name, number of target genes and statistical enrichment values (Z-score, Fisher-score) are reported.
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BMC Genomics

ISSN: 1471-2164

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