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Table 2 Summary of the predicted genes in each BAC clone.

From: Genome size evolution in pufferfish: an insight from BAC clone-based Diodon holocanthus genome sequencing

BAC ID

Scaffold ID

GenBank Acc. No.

Gene Name

ctfa

Scaffold000001

GU002104

ring finger protein 17;centromere protein J; similar to transcription termination factor, RNA polymerase II

 

Scaffold000002

GU002105

hypothetical protein LOC334519; unnamed protein product

 

Scaffold000003

GU002106

similar to ReO_6; similar to ring finger protein 17

ctfb

Scaffold000001

GU002107

similar to GF20795; similar to KH domain-containing, RNA-binding, signal transduction-associated protein 2; EGF-like domain-containing protein; novel protein similar to vertebrate PHDfinger protein 3 (PHF3)

 

Scaffold000002

GU002108

 
 

Scaffold000003

GU002109

similar to KH domain-containing, RNA-binding, signal transduction-associated protein 2

 

Scaffold000004

GU002110

similar to DNA primase large subunit(58 kDa)

 

Scaffold000005

GU002111

 

ctfc

Scaffold000001

GU002112

novel predicted protein; similar to neuron navigator 1; similar to cysteine and glycine-rich protein 2

 

Scaffold000002

GU002113

similar to cardiac troponin T; similar to plakophilin 1

 

Scaffold000003

GU002114

similar to TEA domain family member 3

 

Scaffold000004

GU002115

similar to troponin I, slow skeletal muscle

ctfd

Scaffold000001

GU002116

similar to neurocan; novel predicted protein

 

Scaffold000002

GU002117

unnamed protein product; novel predicted protein; similar to hypothetical LOC100002099; similar to deoxyhypusine hydroxylase/monooxygenase; transmembrane 6 superfamily member 1-like

 

Scaffold000003

GU002118

similar to phosphodiesterase 4D-interacting protein; unnamed protein product

 

Scaffold000004

GU002119

 
 

Scaffold000005

GU002120

unnamed protein product

ctfe

Scaffold000001

GU002121

glutathione S-transferase theta; novel predicted protein

 

Scaffold000002

GU002122

novel predicted protein; d-dopachrome decarboxylase; similar to coiled-coil-helix-coiled-coil-helix domain containing 10; zinc finger 214-contain protein

 

Scaffold000003

GU002123

 

ctff

Scaffold000001

GU002124

similar to human adrenergic receptor kinase 2; similar to human adrenergic receptor kinase 2

 

Scaffold000002

GU002125

similar to beta-adrenergic kinase 2; novel predicted protein

 

Scaffold000003

GU002126

similar to myosin-like protein

 

Scaffold000004

GU002127

similar to beta-adrenergic receptor kinase 2

 

Scaffold000005

GU002128

similar to beta-adrenergic receptor kinase 2

 

Scaffold000006

GU002129

 
 

Scaffold000007

GU002130

 
 

Scaffold000008

GU002131

claudin 5b

 

Scaffold000009

GU002132

novel predicted protein

ctfg

Scaffold000001

GU002133

novel predicted protein; similar to tetraspanin 18; novel predicted protein

 

Scaffold000002

GU002134

similar to erythrocyte membrane protein 3; novel predicted protein

 

Scaffold000003

GU002135

aristaless-like homeobox 4

ctfh

Scaffold000001

GU002136

novel predicted protein; similar to myocyte enhancer factor 2a; novel predicted protein; similar to multiple C2 and transmembrane domain-containing protein 2

 

Scaffold000002

GU002137

novel predicted protein; novel predicted protein; novel predicted protein

 

Scaffold000003

GU002138

 

ctfj

Scaffold000001

GU002139

novel predicted protein; novel predicted protein; similar to sterile alpha motif domain containing 3; similar to zinc finger protein

 

Scaffold000002

GU002140

novel predicted protein; novel predicted protein

 

Scaffold000003

GU002141

unnamed protein product

 

Scaffold000004

GU002142

Dexamethasone-induced Ras-related protein 1 precursor

 

Scaffold000005

GU002143

 
 

Scaffold000006

GU002144

 

ctfk

Scaffold000001

GU002145

similar to calcium-transporting ATPase 2C1 isoform 1a; similar to aldehyde dehydrogenase 5 family, member A1; similar to KIAA0319; Similar to DENN/MADD domain-containing 4B

 

Scaffold000002

GU002146

novel predicted protein; similar to calcium-transporting ATPase 2C1

 

Scaffold000003

GU002147

novel predicted protein

 

Scaffold000004

GU002148

 
 

Scaffold000005

GU002149

 
 

Scaffold000006

GU002150

 
 

Scaffold000007

GU002151

novel predicted protein

 

Scaffold000008

GU002152

 
  1. Novel predicted proteins represent predicted genes that had no significant hits when searched against the non-redundant GenBank protein database using BLASTP. Genes used for the comparisons of intron size variation are underlined.