Table 1 Summary information on identified RAYTs and REPs
Host strain | RAYT symbol | RAYT accession | REP sequenceA) | Nr. of REP copiesB) | rayt-BIME association |
|---|---|---|---|---|---|
Citrobacter koseri ATCC BAA-895 | Ckos | YP_001455335 | GTAG GCCcGgT AAGCG aaGCGC CaCCgGGC GTAG GCCgGaT AAgGCGc ttGCGCC gCCatccGGC | 9/46/77 16/23/65 | N |
Enterobacter sakazakii ATCC BAA-894 | Esak | YP_001437784 | GTAG GGcGGGT AAGCG gAGCGCACCCgCC GTAG GGtGGGT AAGCGc AGCGCACCCaCC | 3/89/159 39/117/180 | N |
Escherichia coli str. K-12 substr. MG1655 | Ecol | NP_414763 | GTAG G acgGAT AAGgCGt tCACGcC GCATCcG GC A GTAG GcatGAT AAGaCGc gcCAgCGtC GCATCa GGC A | 4/52/126 4/19/46 | Y |
Salmonella enterica subsp. enterica serovar Typhi str. CT18 | Sent | NP_458983 | TGTAG GCCGGAT AAGgcg tagcCGCCATCCGGC TGTAG GCCGGAT AAGcaacgCGCCATCCGGC | 1/10/16 1/2/6 | N |
Klebsiella pneumoniae 342 | Kpne | YP_002239241 | GTAG GCCcggc AAGCGc AGCGC CgccgGGC GTAG GCCggat AAgGCG aAGcCGCCatccGGC | 8/12/20 2/11/13 | Y |
Haemophilus parasuis SH0165 | Hpar | YP_002476161 | GTAG GGTGGGTC TTGACCCACC | 20/22/42 | N |
Haemophilus influenzae Rd KW20 | Hinf | NP_438385 | GTAG GGTGGGCT TcAGCCCACC GTAG GGTGGGCT TtAGCCCACC | 6/14/21 5/16/21 | Y |
Coxiella burnetii Dugway 5J108-111 | Cbur | YP_001425023 | GTAG GTTGGGCT GAGCTTGCGAAGCCCAAC | 29/38/40 | N |
Thioalkalivibrio sp. HL-EbGR7 | T_sp | YP_002514838 | GTAG GTCGGCCT TCAGGCCGAC | 38/53/118 | N |
Pseudomonas mendocina ymp | Pmen | YP_001186231 | GTAG CCCGGAT GCAATCCGGG | 75/136/162 | N |
Pseudomonas putida KT2440 | Pput1 | NP_747277 | TGTGG GAGCGGGC gTGCCCGC GAA TGTGG GAGCGGGC aTGCCCGC GAA | 62/193/286 35/172/285 | N |
Pseudomonas putida GB-1 | Pput2 | YP_001671454 | TGTGG GAGCGGGT TtACCCGC GAA TGTGG GAGCGGGT TcACCCGC GAA | 62/95/130 14/80/104 | N |
Pseudomonas putida KT2440 | Pput3 | NP_742731 | TGTGG GAGCGGC CTTGc GTCGC GA TGTGG GAGCG GC CTTGtG TCGC GA | 21/53/69 27/62/72 | N |
Pseudomonas putida W619 | Pput4 | YP_001751446 | TGTAG GAGCGGC CTTGc GTCGC GAA TGTAG GAGCG GC CTTGtG TCGC GAA | 24/112/189 77/174/205 | Y |
Pseudomonas entomophila L48 | Pent1 | YP_608776 | TGTAG GAGCGGAT TCATCCGC GAT | 116/171/443 | N |
Pseudomonas entomophila L48 | Pent2 | YP_610581 | GTAG GAGCCAGC TTGCTGGC GAA | 89/101/564 | N |
Pseudomonas fluorescens SBW25 | Pflu1 | YP_002873491 | GTGG GAGGGGGC TTGCCCCC GAT | 387/557/607 | N |
Pseudomonas fluorescens SBW25 | Pflu2 | YP_002871781 | GTGG CGAGGGAGC TTGCTCCC GCT | 104/192/232 | Y |
Pseudomonas fluorescens SBW25 | Pflu3 | YP_002873800 | TGTgG TGAGCGGGC TTGCCC CGC GCT TGTaG TGAGCGGGC TTGCCC CGC GCT | 83/217/263 119/229/257 | Y |
Xanthomonas axonopodis pv. citri str. 306 | Xaxo | NP_641493 | GTAG GAGCGC ACC tGGGCGC GAC GTAG GAGCGC ACC cGGGCGC GAC | 9/49/85 23/58/88 | Y |
Xanthomonas campestris pv. campestris str. ATCC 33913 | Xcam | NP_636415 | GTAG GAGCGCGC TCGCGCGC GA | 48/177/223 | Y |
Stenotrophomonas maltophilia R551-3 | Smal1 | YP_002030358 | TGTAG AGCCGAGC CCATGCTCGGCT | 49/90/113 | N |
Stenotrophomonas maltophilia R551-3 | Smal2 | YP_002029847 | GGTAG CGCCGGGC CATGCCCGGCG | 259/329/355 | N |
Stenotrophomonas maltophilia K279a | Smal3 | YP_001970973 | GGTGG GTGCCGACC GTTGGTCGGCAC | 52/75/99 | N |
Stenotrophomonas maltophilia K279a | Smal4 | YP_001972572 | GGTAG TGCCGGCC GCTGGCCGGCA | 427/556/644 | Y |
Stenotrophomonas sp. SKA14 | S_sp1 | YP_002706198 | AGTAG ATCCACGC CATGCGTGGAT | 69/147/182 | N |
Stenotrophomonas sp. SKA14 | S_sp2 | YP_002708831 | GGTGG GTGCCAACC TTGGTTGGCAC | 37/84/131 | N |