Table 3 Differentially expressed (DE) genes in the expression profile of 'Fully Resistant' animals 24 hours post-inoculation
From: Gene expression profiling in the lungs of pigs with different susceptibilities to Glässer's disease
Genes grouped by function | Genbank human RefSeq ID | FR v C fold change | FR v S fold change |
|---|---|---|---|
More highly expressed in 'Fully Resistant' animals | |||
Extracellular matrix components | |||
Tenascin C ( TNC ) | NM_002160 | +2.30 | +4.20 |
TGF-β-induced ( TGFBI ) | NM_000358 | +2.20 | +4.69 |
Latent TGF-β binding protein 4 ( LTBP4 ) | NM_003573 | +2.07 | +2.41 |
Collagen, type I, alpha 2 ( COL1A2 ) | NM_000089 | +2.03 | +2.57 |
EGF-containing fibulin-like extracellular matrix protein 2 ( EFEMP2 ) | NM_016938 | +1.95 | +2.01 |
Collagen, type III, alpha 1 ( COL3A1 ) | NM_000090 | +1.85 | +2.43 |
Collagen, type XV, alpha 1 ( COL15A1 ) | NM_001855 | +1.84 | +2.46 |
Collagen, type VI, alpha 3 ( COL6A3 ) | NM_057167 | +1.77 | +2.33 |
Other | |||
X (inactive)-specific transcript (XIST) | NR_001564 | +2.89 | +8.06 |
Slit homolog 3 (SLIT3) | NM_003062 | +2.06 | +2.57 |
Prolylcarboxypeptidase (PRCP) | NM_005040 | +1.89 | +2.60 |
Coiled-coil domain containing 80 (CCDC80) | NM_199512 | +1.83 | +2.43 |
Oligo SS00010557 (no significant hit to known gene) | NONE | +1.78 | +3.36 |
Less highly expressed in 'Fully Resistant' animals | |||
Retinoid-binding | |||
Retinol binding protein 4 ( RBP4 ) | NM_006744 | -2.51 | -6.54 |
Apolipoprotein D ( APOD ) | NM_001647 | -1.80 | -2.43 |
Heat shock proteins | |||
DnaJ, subfamily B, member 1 ( DNAJB1 ) | NM_006145 | -2.03 | -3.51 |
Heat shock 70kDa protein 6 ( HSPA6 ) | NM_002155 | -2.20 | -3.32 |
Lipid mobilization and metabolism | |||
Lipoprotein Lipase (LPL) | NM_000237 | -1.92 | -5.05 |
Other | |||
Oligo SS00011159 (no significant hit to known gene) | NONE | -1.77 | -3.58 |
Transcobalamin I (TCN1) | NM_001062 | -1.82 | -4.63 |
DEAD box polypeptide 3, X-linked (DDX3X) | NM_001356 | -2.22 | -2.36 |