Table 4 Gene sets and survival results for the Stockholm data.
From: Enumerating the gene sets in breast cancer, a "direct" alternative to hierarchical clustering
| Â | all 159 samples | |||
|---|---|---|---|---|
| Â | median | quartiles | ||
|  | χ 2 | p | χ 2 | p |
stromal(2) | 20.01 | 0.000007 | 11.64 | 0.0006 |
stromal(3) | 13.52 | 0.0002 | 11.58 | 0.0006 |
stromal(5) | 13.79 | 0.0002 | 12.72 | 0.0003 |
adipose | 4.66 | 0.03 | 4.13 | 0.04 |
hemoglobin | 3.33 | 0.06 | 4.4 | 0.03 |
16q13 | 2.62 | 0 | 2.12 | 0.14 |
AFFX-BioC-5 | 0.03 | 0.86 | 0.26 | 0.6 |
AFFX-M27830_5 | 0.15 | 0.69 | 2.09 | 0.14 |
basal | 3.42 | 0.06 | 1.14 | 0.28 |
estrogen | 0.02 | 0.88 | 0.98 | 0.32 |
GGT1 | 1.61 | 0.2 | 0.76 | 0.38 |
stromal(0) | 2.49 | 0.11 | 2.35 | 0.12 |
stromal(1) | 0.98 | 0.32 | 0.08 | 0.78 |
immune(0) | 0.13 | 0.72 | 0.1 | 0.75 |
immune(1) | 0 | 0.96 | 0.35 | 0.55 |
immune(2) | 1.1 | 0.29 | 1.11 | 0.29 |
immune(5) | 1.25 | 0.26 | 0 | 0.96 |
LST1 | 0.43 | 0.51 | 0.02 | 0.88 |
OPHN1 | 0.04 | 0.84 | 0.02 | 0.89 |
PPP1R12A | 2.16 | 0.14 | 3.11 | 0.07 |
ribosomal(0) | 0.72 | 0.39 | 0.63 | 0.42 |
TPSAB1 | 0.22 | 0.64 | 0.49 | 0.48 |
UBE2D2 | 0 | 0.99 | 1.9 | 0.16 |
immune(4) | 3.36 | 0.06 | 3.67 | 0.05 |
ezrin | 3.35 | 0.06 | 3.7 | 0.05 |
ACTG1 | 3.85 | 0.04 | 1.65 | 0.19 |
ribosomal(1) | 3.64 | 0.05 | 5.45 | 0.19 |
histone | 6.76 | 0.009 | 5.98 | 0.01 |
CD24 | 2.7 | 0.1 | 8.9 | 0.002 |
GAPDH | 10.96 | 0.0009 | 8.76 | 0.003 |
proliferation | 19.88 | 0.000008 | 13.09 | 0.0002 |