Markedly different genome arrangements between serotype a strains and serotypes b or c strains of Aggregatibacter actinomycetemcomitans

Table 4 Overlap between repeat and inter-LCB region

Strain	Total inter-LCB length (bp)	Total repeat length (bp)	Total overlap (bp)	Percent of repeat overlapping with inter-LCB	Percent of inter-LCB overlapping with repeat
D7S-1^a	251,896	159,531	105,889	66.4%	42%
HK1651^b	90,658	50,603	16,729	33.1%	18.5%
D11S-1^c	112,883	53,208	20,973	39.4%	18.6%

^a Regions between rearranged conserved blocks (inter-LCB) for D7S-1 are obtained from D7S-1 vs HK1651 MAUVE alignment.
^b Regions between rearranged conserved blocks (inter-LCB) for HK1651 are obtained from D7S-1 vs HK1651 MAUVE alignment
^c Regions between rearranged conserved blocks (inter-LCB) for D11S-1 are obtained from D7S-1 vs D11S-1 MAUVE alignment

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