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Table 1 Solexa genome re-sequencing - summary statistics.

From: Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogenic lineage of malaria parasites

 

AS-30CQ

AS-15MF

AS-sens

Passage number

71 AS-30CQ

38 AS-15MF

12407 AS-sens

Number of lanes

6

6

4

Read type

single-end

single-end

single-end

Read length (bases)

41

36

36

Nominal fold coverage

30X

30X

20X

 

% reads mapped to reference sequence

MAQ

97%

90%

91%

SSAHA2

97%

90%

93%

 

- fold coverage

MAQ

77.91

54.21

39.28

SSAHA2

75.86

53.97

39.48