Table 5 Genes that are conserved in LI and LII but absent or disparately distributed in LIII
Gene1 | Annotation | LIII2 | L. innocua 3 | Operon4 |
|---|---|---|---|---|
Carbohydrate transport and metabolism | ||||
lmo0357 | Similar to PTS system, enzyme IIA component | IIIA | + | 059 |
lmo0358 | Similar to PTS system, fructose-specific enzyme IIBC component | IIIA | + | 059 |
lmo0359 | Similar to D-fructose-1,6-biphosphate aldolase" | IIIA | + | - |
lmo0631 | Similar to PTS system, fructose-specific IIA component | IIIA | - | - |
lmo0632 | Similar to PTS system, fructose-specific IIC component | IIIA | + | - |
lmo0633 | Similar to PTS system, fructose-specific IIB component | IIIA | + | - |
lmo0735 | Similar to ribulose-5-phosphate 3-epimerase | IIIA | + | 119 |
lmo0736 | Similar to ribose 5-phosphate isomerase | IIIA | + | 119 |
lmo0738 | Similar to PTS system, beta-glucoside-specific enzyme IIABC | IIIA | + | 119 |
lmo0739 | Similar to 6-phospho-beta-glucosidase | IIIA | + | 119 |
lmo0766 | Similar to putative sugar ABC transporter, permease protein | IIIA | + | - |
lmo0767 | Similar to ABC transporter, permease protein | IIIA | + | - |
lmo1031 | Hypothetical protein | IIIA | - | 166 |
lmo1032 | Similar to transketolase | IIIA | - | 166 |
lmo1033 | Similar to transketolase | IIIA | - | 166 |
lmo1035 | Similar to PTS beta-glucoside-specific enzyme IIABC | IIIA | + | 166 |
lmo1971 | Similar to pentitol PTS system enzyme II C component | IIIA | + | - |
lmo1972 | Similar to pentitol PTS system enzyme II B component | IIIA | + | - |
lmo1973 | Similar to PTS system enzyme II A component | IIIA | + | - |
lmo2133 | Similar to fructose-1,6-biphosphate aldolase type | IIIA | + | - |
lmo2134 | Similar to fructose-1,6-biphosphate aldolase type II | IIIA | + | - |
lmo2135 | Similar to PTS system, fructose-specific enzyme IIC component | IIIA | + | - |
lmo2136 | Similar to PTS system, fructose-specific enzyme IIB component | IIIA | + | - |
lmo2137 | Similar to PTS system, fructose-specific enzyme IIA component | IIIA | + | - |
lmo2143 | Similar to mannose-6-phosphate isomerase | IIIA | - | - |
lmo2733 | Similar to PTS system, fructose-specific IIABC component | IIIA | + | 494 |
lmo2734 | Similar to sugar hydrolase | IIIA | + | 494 |
lmo2735 | Similar to Sucrose phosphorylase | IIIA | + | 494 |
lmo2736 | Hypothetical protein | IIIA | + | 494 |
lmo2771 | Similar to beta-glucosidase | IIIA | + | - |
lmo2772 | Similar to PTS system, beta-glucoside-specific enzyme IIABC | IIIA | + | - |
lmo2847 | Similar to rhamnulose-1-phosphate aldolase | IIIA | + | 516 |
lmo2848 | Similar to L-rhamnose isomerase | IIIA | + | 516 |
lmo2849 | Similar to rhamnulokinase | IIIA | + | 516 |
lmo2850 | Similar to sugar transport proteins | IIIA | + | 516 |
Cell envelope biogenesis, outer membrane | ||||
lmo0017 | Similar to Bacillus anthracis CapA protein | IIIA | - | - |
Cell wall | ||||
lmo0933 | Similar to sugar transferase | IIIA | + | - |
lmo1062 | Similar to ABC transporters (permease protein) | IIIA | + | - |
lmo1088 | TagB, teichoic acid biosynthesis protein B precursor | IIIA | + | 177 |
lmo1089 | TagD, teichoic acid biosynthesis protein D | IIIA | + | 177 |
lmo0333 | Similar to internalin, putative peptidoglycan bound protein | IIIA | - | - |
lmo0842 | Putative peptidoglycan bound protein (LPXTG motif) | IIIA | + | - |
lmo1136 | Similar to internalin, putative peptidoglycan bound protein | IIIA | + | - |
lmo1289 | Similar to internalin, putative peptidoglycan bound protein | IIIA | + | - |
lmo1666 | Peptidoglycan linked protein (LPXTG motif) | IIIA | - | - |
lmo2085 | Putative peptidoglycan binding protein (LPXTG motif) | IIIA | - | - |
lmo2026 | Putative peptidoglycan binding protein (LPXTG motif) | IIIA | + | - |
lmo2550 | Similar to glycosyl transferases | IIIA | + | - |
Energy production and conversion | Â | Â | Â | Â |
lmo0334 | Hypothetical protein | IIIA | - | - |
lmo1034 | Similar to glycerol kinase | IIIA | + | 166 |
General function prediction only | Â | Â | Â | Â |
lmo0752 | Weakly similar to a putative haloacetate dehalogenase | IIIA | - | - |
lmo1970 | Similar to putative phosphotriesterase related proteins | IIIA | + | - |
Phage-related | Â | Â | Â | Â |
lmo2285 | Protein gp18, bacteriophage A118 | IIIA | + | - |
lmo2286 | Protein gp17, bacteriophage A118 | IIIA | + | - |
Secondary metabolites biosynthesis | Â | Â | Â | Â |
lmo2157 | SepA, required for septum formation | IIIA | - | - |
Acid and bile resistance | Â | Â | Â | Â |
lmo0037 | Similar to amino acid transporter | IIIB | - | - |
lmo0038 | Similar to agmatine deiminase | IIIB | - | 008 |
lmo0039 | Similar to carbamate kinase | IIIB | - | 008 |
lmo0040 | Similar to agmatine deiminase | IIIB | - | - |
lmo0447 | Similar to glutamate decarboxylase | IIIA | + | - |
lmo0448 | Similar to amino acid antiporter | IIIA | + | - |
lmo0446 | Similar to penicillin acylase and to conjugated bile acid hydrolase | IIIA | - | - |
lmo0754 | Weakly similar to a bile acid 7-alpha dehydratase | IIIA | - | - |
Transcriptional regulation | Â | Â | Â | Â |
lmo0041 | Similar to transcription regulator, RpiR family | IIIB | - | - |
lmo0360 | Similar to transcriptional regulator, DeoR family | IIIA | + | - |
lmo0749 | Hypothetical protein | IIIA | + | - |
lmo0753 | Similar to transcription regulator, Crp/Fnr family | IIIA | - | - |
lmo1030 | Similar to transcription regulator, BglG family | IIIA | + | - |
lmo1060 | Similar to 2-component response regulator | IIIA | + | - |
lmo2138 | Similar to transcription regulator, BglG family | IIIA | + | - |
lmo2144 | Similar to transcription regulator, GntR family | IIIA | - | - |
lmo2408 | Similar to repressor protein | IIIA | + | - |
lmo2732 | Similar to transcription regulator, RpiR family | IIIA | - | - |
lmo2773 | Similar to transcription antiterminator | IIIA | + | - |
lmo2851 | Similar to transcription regulator, AraC family | IIIA | + | - |
Transport and binding | Â | Â | Â | Â |
Lmo1063 | Similar to ABC transporter (ATP binding protein) | IIIA | + | - |
Lmo1100 | CadA, cadmium resistance protein | IIIA | + | - |
Translation | Â | Â | Â | Â |
Lmo0849 | Similar to amidases | IIIB | + | - |
Function unknown | Â | Â | Â | Â |
lmo0072 | Hypothetical protein | - | - | - |
lmo0086 | Hypothetical protein | IIIA | + | - |
lmo0094 | Hypothetical protein | IIIA | + | - |
lmo0095 | Hypothetical protein | IIIA | + | - |
lmo2846 | Similar to B. subtilis YulD protein | IIIA | + | 516 |
lmo1036 | Hypothetical protein | IIIA | - | 166 |
lmo0444 | Hypothetical protein | IIIA | + | - |
lmo0765 | Hypothetical protein | IIIA | + | - |