From: Burst expansion, distribution and diversification of MITEs in the silkworm genome
Family | TSD1 | TIR | Size (bp) | AT content (%) | No.FC2 | No.FLC3(%) | -ΔG4 | Known family |
---|---|---|---|---|---|---|---|---|
BmMITE-1 | WW | TCGATGGCTCCAATGAACACTAC | 234 | 68 | 216 | 44(17) | 39 | Novel |
BmMITE-2 | TA/AT | TGAGTCGACTATTATCAAAG | 278 | 67 | 419 | 2371(85) | 66 | Hoshidandy 5 |
BmMITE-3 | TA | GATATGTGTCGTTCG | 306 | 54 | 12 | 34(74) | 47 | Stowaway-like |
BmMITE-4 | TWA | GGGTCAATTCCCACTGAAAGAGCAGCGGC | 567 | 44 | 9 | 7(44) | 125 | Tourist-like |
BmMITE-5 | TWA | AGCCTTGTTCGCACTAAGCGAGTATTTTA GTCGAGTACCGAGTAATTTAGTGGCTAAA | 213 | 61 | 53 | 81(60) | 74 | Tourist-like |
BmMITE-6 | TWA | GGGCCTGTGCACACCACGTTTTTTAA | 270 | 52 | 11 | 8(42) | 81 | Tourist-like |
BmMITE-7 | TDA | TGCTGGAACCACACTGCG | 548 | 55 | 7 | 13(65) | 93 | Organdy 6 |
BmMITE-8 | TA | TATATCGACGCTTGAAAGGCAAAC | 266 | 67 | 1364 | 147(10) | 47 | Stowaway-like |
BmMITE-9 | ATT | GGTAGTTTTCCAATTACAG | 418 | 63 | 75 | 88(54) | 52 | Novel |
BmMITE-10 | ATAT | CGTCGCTGTCAAACCAAAATCTGCTATGTGCAA | 258 | 70 | 142 | 159(53) | 38 | Novel |
BmMITE-11 | ATATAT | GTGGGATT | 238 | 67 | 1 | 15(94) | 8 | Novel |
BmMITE-12 | TTCATTT | TTACTTTGCA | 210 | 73 | 20 | 121(86) | 14 | Novel |
BmMITE-13 | NNNNNNNN | CAAGGGCGGATCCAG | 263 | 59 | 69 | 171(71) | 32 | Pegasus-like |
BmMITE-14 | NNNNNNNN | CAGTGGCGGATTA | 431 | 59 | 12 | 22(65) | 38 | Pegasus-like |
BmMITE-15 | NNNNNNNN | CAGTGGCGTACCTA | 300 | 65 | 0 | 9(100) | 60 | Pegasus-like |
BmMITE-16 | NNNNNNNN | CAGTGGCGGATTT | 265 | 55 | 18 | 25(58) | 43 | Pegasus-like |
BmMITE-17 | TTACTGTAT | GCGCGCGAGTTCATGT | 494 | 59 | 20 | 22(52) | 53 | Novel |