Table 2 Genes for csRNAs predicted in streptococcal species other than S. pneumoniae.
straina | csRNAb | sizec | begin | end |
|---|---|---|---|---|
S. mitis B6 | csRNA3(B6) | 99 | 23857 | 23955 |
csRNA4(B6) | 96 | 1932077 | 1931982 | |
csRNA2(B6) | 97 | 1936359 | 1936263 | |
csRNA1(B6) | 94 | 1936548 | 1936455 | |
csRNA5(B6) | 146 | 1944227 | 1944082 | |
S. oralis Uo5 | csRNA3(Uo5) | 100 | 21777 | 21876 |
csRNA4(Uo5) | 93 | 1712653 | 1712561 | |
csRNA2(Uo5) | 98 | 1714371 | 1714274 | |
csRNA6(Uo5) | 200 | 1714673 | 1714474 | |
csRNA1(Uo5) | 95 | 1724567 | 1724473 | |
S. sanguinis SK36 | csRNA1-1(SK36) | 91 | 65114 | 65204 |
csRNA1-2(SK36) | 94 | 65322 | 65415 | |
csRNA7(SK36) | 85 | 67110 | 67194 | |
csRNA8(SK36) | 177 | 545784 | 545959 | |
csRNA2(SK36) | 95 | 2160890 | 2160796 | |
csRNA1-3(SK36) | 84 | 2183995 | 2183912 | |
S. agalactiae NEM316 | csRNA10(NEM316) | 145 | 459709 | 459565 |
csRNA11(NEM316) | 96 | 622777 | 622872 | |
csRNA12(NEM316) | 65 | 1755431 | 1755367 | |
csRNA13(NEM316) | 66 | 2160062 | 2160127 | |
S. dysgalactiae subsp. equisimilus GGS_124 | csRNA14(GGS124) | 68 | 1514790 | 1514723 |
csRNA15(GGS124) | 141 | 1916876 | 1917016 | |
csRNA16(GGS124) | 127 | 1975022 | 1974896 | |
csRNA17(GGS124) | 117 | 1975620 | 1975736 | |
S. equi subsp. equi 4047 | csRNA18(4047) | 50d | 194835 | 194786 |
csRNA17(4047) | 105 | 200539 | 200643 | |
S. equi subsp. zooepidemicus MGCS10565 | csRNA18(MGCS10565) | 67 | 159514 | 159448 |
csRNA19(MGCS10565) | 105 | 164153 | 164257 | |
csRNA20(MGCS10565) | 108 | 236846 | 236739 | |
S. gallolyticus UCN34 | csRNA18(UCN34) | 66 | 2864 | 2929 |
csRNA40-1(UCN34) | 65 | 51782 | 51718 | |
csRNA9(UCN34) | 63 | 679884 | 679822 | |
csRNA38(UCN34) | 138 | 2175160 | 2175297 | |
csRNA39(UCN34) | 118 | 2189828 | 2189945 | |
csRNA40-2(UCN34) | 71 | 2266270 | 2266200 | |
S. gordonii str. Challis substr. CH1 | csRNA7(CH1) | 88 | 116691 | 116778 |
csRNA21(CH1) | 58 | 161804 | 161861 | |
csRNA2-1(CH1) | 95 | 179826 | 179920 | |
csRNA1(CH1) | 87 | 1360105 | 1360019 | |
csRNA22(CH1) | 202 | 1721745 | 1721593 | |
csRNA2-2(CH1) | 95 | 2038879 | 2038785 | |
S. mutans UA159 | csRNA23-1(UA159) | 79 | 44425 | 44503 |
csRNA24(UA159) | 152 | 303857 | 303706 | |
csRNA23-2(UA159) | 81 | 1501299 | 1501219 | |
S. pyogenes MGAS315 | csRNA15(MGAS315) | 142 | 188268 | 188127 |
csRNA14(MGAS315) | 68 | 1276812 | 1276745 | |
csRNA25(MGAS315) | 129 | 1784361 | 1784233 | |
S. suis 05ZYH33 | csRNA26(05ZYH33) | 172 | 52590 | 52761 |
csRNA27(05ZYH33) | 73 | 278732 | 278804 | |
csRNA28(05ZYH33) | 51 | 352037 | 352094 | |
S. uberis 0140J | csRNA29(0140J) | 84 | 46527 | 46610 |
csRNA30(0140J) | 83 | 54985 | 55067 | |
csRNA31(0140J) | 67 | 64276 | 64210 | |
csRNA32(0140J) | 140 | 1675433 | 1675572 | |
S. thermophilus CNRZ1066 | csRNA33(CNRZ1066) | 66 | 8588 | 8653 |
csRNA34(CNRZ1066) | 85 | 42534 | 42618 | |
csRNA35(CNRZ1066) | 64 | 44784 | 44847 | |
csRNA36(CNRZ1066) | 97 | 51297 | 51393 | |
csRNA37(CNRZ1066) | 127 | 51629 | 51755 | |
S. thermophilus St0 plasmid pSt0 | csRNA9(pST0) | 60 | 677 | 736 |
S. mitis SF100 | csRNA2(SF100) | 98 | 2967 | 2870 |
csRNA6(SF100) | 200 | 3271 | 3072 |