Skip to main content

Table 1 SNP variation within line observed with the 5X genome resequencing.

From: SNP detection and prediction of variability between chicken lines using genome resequencing of DNA pools

SNP variation

No. of SNPs

Fraction of SNPs (%)

All reads from both lines differ from the reference

719 288

22

All reads from one line differ from the reference

1 338 437

40

One line biallelic

1 175 291

35

Both lines biallelic

109 796

3

  1. Counts and fraction of the 3 342 812 SNPs detected in genome resequencing based on their variation within line and against the RJF reference.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us