Table 3 Mapping statistics for sea bass BAC-ES comparatively mapped to the stickleback chromosomes VIII to XIV.
A | stickleback chromosome | CHR VIII | CHR IX | CHR X | CHR XI | CHR XII | CHR XIII | CHR XIV |
|---|---|---|---|---|---|---|---|---|
| Â | stickleback chromosome size [bp] | 19,368,704 | 20,249,479 | 15,657,440 | 16,706,052 | 18,401,067 | 20,083,130 | 15,246,461 |
| Â | genetic linkage group sea bass | LG4 | LG7 | LG9 | LG8 | ? | LG20 | LG19 |
B | sea bass BAC-contigs | 30 (44) | 37 (45) | 31 (37) | 30 (27) | 27 (35) | 26 (38) | 18 (33) |
| Â | largest BAC-contig [bp] | 4,711,769 (3,129,353) | 3,058,355 (1,487,429) | 1,368,409 (1,368,348) | 4,014,839 (3,993,770) | 4,710,925 (2,950,196) | 3,478,171 (3,182,188) | 3,545,956 (1,757,446) |
| Â | % of chr. covered by BAC-contigs | 85.8% (77.0%) | 82.9% (69.7%) | 84.2% (75.4%) | 83.3% (74.4%) | 88.5% (78.1%) | 90.6% (81.8%) | 88.0% (77.5%) |
| Â | number of BACs in min. tiling path | 188 (177) | 195 (174) | 152 (140) | 155 (147) | 177 (160) | 194 (176) | 150 (142) |
| Â | paired end aligned consistent BACs | 869 (517) | 855 (448) | 712 (410) | 816 (494) | 902 (559) | 1,121 (678) | 792 (414) |
| Â | one end aligned BACs | 1,002 (1,190) | 1,190 (1,168) | 897 (879) | 1,101 (1,089) | 1,211 (1,364) | 1,194 (1,266) | 931 (1,017) |
C | inconsistently aligned same chr. | 110 (112) | 84 (90) | 90 (118) | 81 (86) | 58 (90) | 42 (80) | 59 (62) |
| Â | potential intra-chr. rearrangements between stickleback and sea bass | 10 | 12 | 16 | 13 | 12 | 9 | 6 |
| Â | intra-chr. rearrangements also found between medaka and stickleback | 5 | 9 | 13 | 7 | 9 | 3 | 2 |
| Â | BAC-contigs with same neighbour in medaka as in stickleback | 15 | 12 | 6 | 8 | 6 | 7 | 9 |
D | total annotated genes in ensembl | 876 | 1,009 | 802 | 1,050 | 1,000 | 970 | 738 |
| Â | % genes covered by BAC-contigs | 83.4% (75.9%) | 80.0% (70.5%) | 81.2% (70.7%) | 83.5% (75.3%) | 86.8% (76.5%) | 89.6% (81.6%) | 85.2% (74.9%) |