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Table 1 Genes differentially expressed (P < 0.05) in control lines following Cre-mediated excision of the ABF3 transgene

From: Transcriptome analysis reveals absence of unintended effects in drought-tolerant transgenic plants overexpressing the transcription factor ABF3

Line

Probe Set ID

AGI

Annotation

M

P

48

267442_at

At2g19080

Metaxin-related

0.68

1.22 × 10-2

57

244939_at

AtCg00065

Ribosomal protein s12 (Transplice part 1 of 2) (rps12.1)*

2.58

9.11 × 10-4

 

244992_s_at

AtCg00900/AtCg01240

Ribosomal protein s7 (rps7)*

1.50

2.97 × 10-2

 

245608_at

At4g14350

Protein kinase family protein

-0.99

5.86 × 10-3

 

247137_at

At5g66210

Calcium-dependent protein kinase family protein (CDPK28)

-1.20

3.35 × 10-2

 

247754_at

At5g59080

Expressed protein

1.33

2.20 × 10-2

 

248812_at

At5g47330

Palmitoyl protein thioesterase family protein

2.34

7.24 × 10-3

 

252053_at

At3g52400

Syntaxin, putative (SYP122)

-1.09

3.60 × 10-2

 

255655_at

At4g00980

Zinc knuckle (CCHC-type) family protein

1.39

4.60 × 10-6

 

259072_at

At3g11700

Fasciclin-like arabinogalactin protein 18 precursor (FLA18)

-0.73

2.29 × 10-3

 

259348_at

At3g03770

Leucine-rich repeat transmembrane protein kinase, putative

0.91

1.82 × 10-2

59

244939_at

AtCg00065

Ribosomal protein s12 (Transplice part 1 of 2) (rps12.1)*

2.50

1.52 × 10-3

 

244992_s_at

AtCg00900/AtCg01240

Ribosomal protein s7 (rps7)*

1.51

2.69 × 10-2

 

246727_at

At5g28010

Bet v I allergen family protein

2.02

1.10 × 10-5

 

262719_at

At1g43590

Transposable element gene

1.29

1.30 × 10-2

  1. M is log2 fold change and P is FDR-adjusted P-value for Student's t-test.
  2. * indicates genes encoded by the chloroplast genome.