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Table 4 Examples of typical drought-responsive genes regulated similarly in 35S:ABF3 and control plant lines

From: Transcriptome analysis reveals absence of unintended effects in drought-tolerant transgenic plants overexpressing the transcription factor ABF3

   

2 h

24 h

Probe Set ID

AGI

Annotation

Control

35S:ABF3

Control

35S:ABF3

Osmolyte metabolism

251505_at

At3g59050

Polyamine oxidase 3

  

1.365

1.409

266072_at

At2g18700

Trehalose-phosphatase/synthase 11 (AtTPS11)

1.173

1.290

  

254321_at

At4g22590

Trehalose-6-phosphate phosphatase, putative

  

2.262

2.652

250467_at

At5g10100

Trehalose-6-phosphate phosphatase, putative

  

1.716

1.560

LEA class proteins

250648_at

At5g06760

LEA group 1 domain-containing protein

2.281

2.823

2.537

3.013

262128_at

At1g52690

LEA protein, putative

3.087

3.667

  

267261_at

At2g23120

Expressed protein

  

1.651

1.688

266392_at

At2g41280

LEA protein M10

  

2.258

2.473

252988_at

At4g38410

Dehydrin, putative

  

2.692

2.516

Kinases

252592_at

At3g45640

MAPK, putative (MPK3)

1.681

1.772

1.259

1.651

258682_at

At3g08720

Serine/threonine protein kinase (PK19)

  

1.160

1.383

250673_at

At5g07070

CBL-interacting protein kinase 2 (CIPK2)

1.408

1.261

1.551

1.827

254996_at

At4g10390

Protein kinase family protein

  

2.177

1.763

249361_at

At5g40540

Protein kinase, putative

  

2.768

3.066

248821_at

At5g47070

Protein kinase, putative

  

1.547

1.487

Phosphatases

247957_at

At5g57050

Abscisic acid-insensitive 2 (ABI2)

1.617

2.228

  

247723_at

At5g59220

Protein phosphatase 2C, putative

1.675

2.115

  

251259_at

At3g62260

Protein phosphatase 2C, putative

2.533

2.710

2.902

2.440

253323_at

At4g33920

Protein phosphatase 2C family protein

1.385

1.615

1.767

1.779

Transcription factors

250582_at

At5g07580

Ethylene-responsive element-binding family protein

-1.878

-1.668

  

265452_at

At2g46510

Basic helix-loop-helix family protein

  

1.918

2.460

247509_at

At5g62020

Heat shock transcription factor B2A (AtHSFB2A)

1.133

1.135

1.594

1.900

251272_at

At3g61890

Homeobox-leucine zipper protein 12 (HB-12)

2.421

2.536

1.914

2.554

260237_at

At1g74430

Myb family transcription factor (MYB95)

  

1.931

1.942

255753_at

At1g18570

Myb family transcription factor (MYB51)

2.127

1.409

  

254652_at

At4g18170

WRKY family transcription factor (WRKY28)

3.564

2.709

  

261648_at

At1g27730

Zinc finger (C2H2 type) family protein (ZAT10)

3.665

3.663

4.978

5.127

  1. Values are log2 fold changes.
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BMC Genomics

ISSN: 1471-2164

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