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Table 8 Genes encoded by the chloroplast and mitochondrial genomes showing attenuated regulation in 35S:ABF3 plants

From: Transcriptome analysis reveals absence of unintended effects in drought-tolerant transgenic plants overexpressing the transcription factor ABF3

Probe Set

  

2 h

24 h

ID

AGI

Annotation

Control

35S:ABF3

Control

35S:ABF3

Electron transport activity

266045_s_at

At2g07727/AtMg00220

Cytochrome b (MTCYB) (COB) (CYTB)/apocytochrome b (cob) †

2.060

   

244903_at

AtMg00660

Hypothetical protein (orf149)†

1.645

   

244977_at

AtCg00730

Subunit IV of cytochrome b6/f complex (petD)*

2.993

 

3.118

 

NADH dehydrogenases

244943_at

AtMg00070

NADH dehydrogenase subunit 9 (nad9)†

1.338

  

1.416

257337_at

AtMg00060

NADH dehydrogenase subunit 5 (nad5) (Transplice part 3 of 3)†

1.413

   

244933_at

AtCg01070

NADH dehydrogenase ND4L (ndhE)*

1.733

   

244994_at

AtCg01010

Chloroplast encoded NADH dehydrogenase unit (ndhF)*

3.240

   

244934_at

AtCg01080

NADH dehydrogenase ND6 (ndhG)*

2.465

   

244991_s_at

AtCg00890/AtCg01250

NADH dehydrogenase ND2 (ndhB)*

3.528

   

RNA processing

244999_at

AtCg00190

RNA polymerase subunit beta (rpoB)*

2.792

   

Translation

245005_at

AtCg00330

Chloroplast ribosomal protein s14 (rps14)*

3.796

 

3.644

 

244970_at

AtCg00660

Ribosomal protein L20 (rpl20)*

2.379

   

244939_at

AtCg00065

Ribosomal protein s12 (Transplice part 1 of 2) (rps12.1)*

1.653

   

ATPase subunits

244995_at

AtCg00150

Subunit of ATPase complex CF0 (atpI)*

2.049

   

266012_s_at

AtMg00410/AtMg01170/At2g07699/At2g07741

ATPase subunit 6†

1.924

   

Other

257319_at

AtMg01100

Hypothetical protein (orf105a)†

1.181

   

244989_s_at

AtCg00860/AtCg01280

Expressed protein (ycf2)*

3.493

   

245008_at

AtCg00360

Protein required for photosystem I assembly and stability (ycf3)*

2.371

   

244990_s_at

AtCg00870/AtCg01270

Hypothetical protein (ycf15/orf77)*

3.607

  

2.841

245016_at

AtCg00500

Acetyl-CoA carboxylase carboxyl transferase subunit beta (accD)*

1.452

   

266014_s_at

At2g07722/AtMg00170/AtMg00620

Hypothetical protein†

1.987

   
  1. Values are log2 fold changes.
  2. * indicates gene is encoded by the chloroplast genome.
  3. † indicates gene is encoded by the mitochondrial genome.
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BMC Genomics

ISSN: 1471-2164

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